View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17793_low_78 (Length: 280)
Name: NF17793_low_78
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_low_78 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 9 - 261
Target Start/End: Complemental strand, 43331764 - 43331512
Alignment:
| Q |
9 |
aagcaaaggaagaaaagtcaaaaagtacaacaatcattatatacgaagcttgatttgagagctactggccggttaatttcttgtattggaactccaaaaa |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| | |
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| T |
43331764 |
aagcgaaggaagaaaagtcaaaaagtacaacaatcattatatacgaagcttgatttgagagctactggacggttaatctcttgtattggaactccaaaga |
43331665 |
T |
|
| Q |
109 |
ctgaaagaagcaaggcagtgcaagagagtattgagttgaggatgtgcaaattcaaaatgtcaggaggttcagagtgcaaaaagatcatatatacatgagt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
43331664 |
ctgaaagaagcaaggcagtgcaagagagtattgagttgaggatgtgcaaagtcaaaatgtcaggaggttcagagtgcaaaatgatcatatatacatgagt |
43331565 |
T |
|
| Q |
209 |
aactttagaaaggtagggggttcatgtgcatcccctcaaggaagagtggctcc |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43331564 |
aactttagaaaggtagggggttcatgtgcatcccctcaagcaagagtggctcc |
43331512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 9 - 248
Target Start/End: Original strand, 49498801 - 49499040
Alignment:
| Q |
9 |
aagcaaaggaagaaaagtcaaaaagtacaacaatcattatatacgaagcttgatttgagagctactggccggttaatttcttgtattggaactccaaaaa |
108 |
Q |
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|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| | |
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| T |
49498801 |
aagcgaaggaagaaaagtcaaaaagtacaataatcattatatacgaagcttgatttgagagctactggccggttaatctcttgtgttggaactccaaaga |
49498900 |
T |
|
| Q |
109 |
ctgaaagaagcaaggcagtgcaagagagtattgagttgaggatgtgcaaattcaaaatgtcaggaggttcagagtgcaaaaagatcatatatacatgagt |
208 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49498901 |
ttgaaagaagcaaggcagtgcaatagagtattgagttgaggaggtgcaaagtcaaaatgtcaggaggttcagagtgcaaaaagatcatatatacatgagt |
49499000 |
T |
|
| Q |
209 |
aactttagaaaggtagggggttcatgtgcatcccctcaag |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
49499001 |
aactttagaaaggtagggggttcatgtgcatcccctcaag |
49499040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 20141403 - 20141179
Alignment:
| Q |
17 |
gaagaaaagtcaaaaagtacaacaatcattatatacgaagcttgatttgagagctactggccggttaatttcttgtattggaactccaaaaactgaaaga |
116 |
Q |
| |
|
||||||||||||||| |||||| ||| |||||||| || ||||||||||||||| ||| ||||| |||||||||||||||||||| || |||||| |
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| T |
20141403 |
gaagaaaagtcaaaaggtacaataattattatatagaaaatttgatttgagagctattgg----ttaatctcttgtattggaactccaaagaccgaaaga |
20141308 |
T |
|
| Q |
117 |
agcaaggcagtgcaagagagtattgagttgaggatgtgcaaattcaaaatgtcaggaggttcagagtgcaaaaagatcatatatacatgagt-aacttta |
215 |
Q |
| |
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||||| |||| |||||||| |||||| ||||||| ||||||| | ||||| |||| ||||||| |||| || | |||||||||| | | || ||||||| |
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| T |
20141307 |
agcaa-gcag-gcaagagaatattgaattgaggaggtgcaaagttaaaatctcagcaggttcatagtgtaaca--atcatatatatacgtgtaaacttta |
20141212 |
T |
|
| Q |
216 |
gaaaggtagggggttcatgtgcatcccctcaag |
248 |
Q |
| |
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||||| |||||||||| ||||||||||||||| |
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| T |
20141211 |
gaaagccagggggttcaggtgcatcccctcaag |
20141179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 663126 - 663211
Alignment:
| Q |
17 |
gaagaaaagtcaaaaagtacaacaatcattatatacgaagcttgatttgagagctactggccggttaatttcttgtattggaactccaaa |
106 |
Q |
| |
|
|||||||||| |||| |||||| ||| |||||||| ||| ||| |||||||||||| | ||||| | |||||||||||||||||||| |
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| T |
663126 |
gaagaaaagttaaaaggtacaataattattatataggaaactttatttgagagctatt----ggttagtctcttgtattggaactccaaa |
663211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 244
Target Start/End: Complemental strand, 363268 - 363048
Alignment:
| Q |
17 |
gaagaaaagtcaaaaagtacaacaatcattatatacgaagcttgatttgagagctactggccggttaatttcttgtattggaactccaaaaactgaaaga |
116 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||| || |||||||||||||||| | ||||||| ||||| |||||||||||||| || |||||| |
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| T |
363268 |
gaagaaaagtcaaaaggtacaataatcattatatagaaaacttgatttgagagctatt----ggttaatctcttgcattggaactccaaagaccgaaaga |
363173 |
T |
|
| Q |
117 |
agcaaggcagtgcaagagagtattgagttgaggatgtgcaaattcaaaatgtcaggaggttcagagtgcaaaaagatcatatatacatgagt-aacttta |
215 |
Q |
| |
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||||| |||| |||||||| |||||| ||||||| ||||||| | ||||| |||| |||||||||||| || || ||||||||| ||| || || |||| |
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|
| T |
363172 |
agcaa-gcag-gcaagagaatattgaattgaggaggtgcaaagttaaaatctcagtaggttcagagtgtaacaatatcatatat--atgtgtaaatttta |
363077 |
T |
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| Q |
216 |
gaaaggtagggggttcatgtgcatcccct |
244 |
Q |
| |
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||||| || ||||||| ||||||||||| |
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| T |
363076 |
gaaagccagagggttcaggtgcatcccct |
363048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 34600052 - 34600230
Alignment:
| Q |
17 |
gaagaaaagtcaaaaagtacaacaatcattatatacgaagcttgatttgagagctactggccggttaatttcttgtattggaactccaaaaactgaaaga |
116 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||| || |||||||||||||||| | ||||||| |||||||||||||||||||| || |||||| |
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| T |
34600052 |
gaagaaaagtcaaaaggtacaataatcattatatagaaaacttgatttgagagctatt----ggttaatctcttgtattggaactccaaagaccgaaaga |
34600147 |
T |
|
| Q |
117 |
agcaaggcagtgcaagagagtattgagttgaggatgtgcaaattcaaaatgtcaggaggttcagagtgcaaaaagatcatatata |
201 |
Q |
| |
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||||| |||| |||||||| |||||| ||||||| ||||||| | ||||| ||| || ||||||||| || || |||||||||| |
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|
| T |
34600148 |
agcaa-gcag-gcaagagaatattgaattgaggaggtgcaaagttaaaatctcaacagattcagagtgtaacaatatcatatata |
34600230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 3217076 - 3216915
Alignment:
| Q |
17 |
gaagaaaagtcaaaaagtacaacaatcattatatacgaagcttgatttgagagctactggccggttaatttcttgtattggaactccaaaaactgaaaga |
116 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||| || |||||||||||||||| | ||||||| | |||| |||| |||||||| || |||||| |
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|
| T |
3217076 |
gaagaaaagtcaaaaggtacaataatcattatatagaaaacttgatttgagagctatt----ggttaatctattgtgttgggactccaaagaccgaaaga |
3216981 |
T |
|
| Q |
117 |
agcaaggcagtgcaagagagtattgagttgaggatgtgcaaattcaaaatgtcaggaggttcagagtg |
184 |
Q |
| |
|
||||| |||| |||||||| |||||| ||||||| |||| || | ||||| |||| |||||||||||| |
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|
| T |
3216980 |
agcaa-gcag-gcaagagaatattgaattgaggaggtgccaagttaaaatctcagcaggttcagagtg |
3216915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 238
Target Start/End: Complemental strand, 32557252 - 32557219
Alignment:
| Q |
205 |
gagtaactttagaaaggtagggggttcatgtgca |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
32557252 |
gagtaactttagaaaggtagggggttcatgtgca |
32557219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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