View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17793_low_79 (Length: 278)
Name: NF17793_low_79
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_low_79 |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 10 - 261
Target Start/End: Complemental strand, 16973084 - 16972832
Alignment:
| Q |
10 |
attattctcatgtttttgttctacattaatagatctttgtgattgataatttaatttatttgtaggg-cgaagagaaactcaggtgcacattgcagggaa |
108 |
Q |
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| T |
16973084 |
attattctcatgtttttgttctacattaatagatttttatgatttataatttaatttatttgtaggggcgaagagaaactcaggtgcacattgcagggaa |
16972985 |
T |
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| Q |
109 |
aatatgtaattttgtacgtaacaacatacctttgaatatggtattgtgaaagacacatgctctaaattatgatggtctgatcgtggatgtccatttaaga |
208 |
Q |
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| T |
16972984 |
aatatgtaattttgtacgtaacaacatatctttgaatatggtattgtgaaagacacatgctctaaattatgatggtctgatcgtgaatgtccatttaaga |
16972885 |
T |
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| Q |
209 |
attgtttggttaggcttacagagaaatatggacgatatcattgactaggaaaa |
261 |
Q |
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| T |
16972884 |
attgtttggttaggcttacagagaaatatggacgacatcattgactaggaaaa |
16972832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 98
Target Start/End: Complemental strand, 33642579 - 33642527
Alignment:
| Q |
47 |
tgtgattgataatttaatttatttgtag-ggcgaagagaaactcaggtgcaca |
98 |
Q |
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| T |
33642579 |
tgtgatttataatttaatttatttgtagaggaggggagaaactcaggtgcaca |
33642527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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