View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17793_low_80 (Length: 277)
Name: NF17793_low_80
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_low_80 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 53902987 - 53902724
Alignment:
| Q |
1 |
gtttctctctgacccttcaacatgggtagaagttttgagccatttcaaggtgacaacacctttaggattccatcaccattagaacaaccaccatattatt |
100 |
Q |
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| T |
53902987 |
gtttctctctgacccttcaacatgggtagaagttttgagccatttcaaggtgacaacacctttatgattccatcaccattagaacaaccaccatattatt |
53902888 |
T |
|
| Q |
101 |
ttcaacctcacccaccatttccacctatcacagtttctactctaagatctaataataatagtaatttcagttttaacaatagcaccttaaaggttagtcc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53902887 |
ttcaacctcacccaccatttccacctatcacagtttctactctaagatctaataataatagtaatttcagttttaacaatagcaccttaaaggttagtcc |
53902788 |
T |
|
| Q |
201 |
aggtattcttataatcattacaattttagctattgttttcttcatttctggtttgcttcatctc |
264 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53902787 |
aggtattcttataatcattacaattttagctattgttttcttcatttctggtttgcttcatctc |
53902724 |
T |
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