View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17793_low_81 (Length: 270)
Name: NF17793_low_81
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_low_81 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 6 - 242
Target Start/End: Original strand, 38339291 - 38339532
Alignment:
| Q |
6 |
cacagatagcaaatacacaaataaaaataactggacgaaaacgaacgttcagaaaggcaaaatgtgcatggcgctacatcagtgtcgggatggtcacaac |
105 |
Q |
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| T |
38339291 |
cacaaatagcaaatacacaaataaaaacaactggacgaaaacgaacgttcagaaaggcaaaacgtgcatggcgctacatcagcgtcgggatggtcacaac |
38339390 |
T |
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| Q |
106 |
tcaattccgcactactttgccgtgattgtatcgctaagttccgccattgacaatatagcaagcaataaga-----tctttgataaatattacatttataa |
200 |
Q |
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| T |
38339391 |
tcaattccgcactactttgccgtgattgtatcgctaagttccgccattgacaatatagcaagcaataagattatttctttgataaatattacatttataa |
38339490 |
T |
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| Q |
201 |
taaaattatcataaaccatgtgcatcaaaagaatagtggcat |
242 |
Q |
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| T |
38339491 |
taaaattatcataaaccatgtgcatcaaaaaaatagtggcat |
38339532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 38331618 - 38331654
Alignment:
| Q |
202 |
aaaattatcataaaccatgtgcatcaaaagaatagtg |
238 |
Q |
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||||||| ||||||||||||||||||||||||||||| |
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| T |
38331618 |
aaaattaccataaaccatgtgcatcaaaagaatagtg |
38331654 |
T |
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