View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17793_low_82 (Length: 269)

Name: NF17793_low_82
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17793_low_82
NF17793_low_82
[»] chr3 (12 HSPs)
chr3 (10-251)||(27392476-27392717)
chr3 (10-251)||(19472106-19472347)
chr3 (10-251)||(18026734-18026975)
chr3 (10-239)||(12145782-12146011)
chr3 (10-251)||(11418462-11418721)
chr3 (10-239)||(27375965-27376194)
chr3 (10-83)||(27347361-27347434)
chr3 (25-84)||(26210361-26210420)
chr3 (25-84)||(26237605-26237664)
chr3 (11-52)||(28131895-28131936)
chr3 (11-52)||(28510916-28510957)
chr3 (11-51)||(28002148-28002188)
[»] chr2 (1 HSPs)
chr2 (11-206)||(22390920-22391115)
[»] scaffold0043 (1 HSPs)
scaffold0043 (17-83)||(54998-55064)
[»] chr7 (1 HSPs)
chr7 (11-52)||(8693604-8693645)


Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 10 - 251
Target Start/End: Original strand, 27392476 - 27392717
Alignment:
Q  10 attattctagaagtagagaaaacaatttccaatttttcacatcccttaattttcatcttagtaaggtttttgaggtaaaaagannnnnnnagacccttaa 109  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||    
T  27392476 attattatagaagtagagaaaacaatttccaatttttcacatcccttaattttcatcttagtaaggtttttgaggtaaaaagatttttttagacccttaa 27392575  T
Q  110 aaagacatgtcaacataggtagattatataactcaatgttttgcaatcccaagttcatctcccgctcacttacttcattgagacaacatatactttcaac 209  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27392576 aaagacatgtcaacataggtagagtatataactcaatgttttgcaatcccaagttcatctcccgctcacttacttcattgagacaacatatactttcaac 27392675  T
Q  210 attggaattttctaccttcaacttttccaaagcgacaaaatg 251  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  27392676 attggaattttctaccttcaacttttccaaagcgacaaaatg 27392717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 10 - 251
Target Start/End: Complemental strand, 19472347 - 19472106
Alignment:
Q  10 attattctagaagtagagaaaacaatttccaatttttcacatcccttaattttcatcttagtaaggtttttgaggtaaaaagannnnnnnagacccttaa 109  Q
    |||||| |||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |       ||||||||||    
T  19472347 attattatagatgtggagaaaacattttccaatttttcacatcccttaattttcatcttagtaaggtttttgaggaaaaaatatttttttagacccttaa 19472248  T
Q  110 aaagacatgtcaacataggtagattatataactcaatgttttgcaatcccaagttcatctcccgctcacttacttcattgagacaacatatactttcaac 209  Q
    ||||||||||||||||||||||| |||| ||||||||| |||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  19472247 aaagacatgtcaacataggtagagtatacaactcaatgatttgcaatccgaagttcatctcccactcacctacttcattgagacaacatatactttcaac 19472148  T
Q  210 attggaattttctaccttcaacttttccaaagcgacaaaatg 251  Q
    ||||||||| |||||||||||| |||||||||||||||||||    
T  19472147 attggaattatctaccttcaacctttccaaagcgacaaaatg 19472106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 10 - 251
Target Start/End: Original strand, 18026734 - 18026975
Alignment:
Q  10 attattctagaagtagagaaaacaatttccaatttttcacatcccttaattttcatcttagtaaggtttttgaggtaaaaagannnnnnnagacccttaa 109  Q
    |||||| ||||| ||||||||| ||| ||||||||||||||||||  |||| ||||| | ||||||||||||||| |||||||       ||||||||||    
T  18026734 attattatagaaatagagaaaataatctccaatttttcacatcccacaattatcatcattgtaaggtttttgagggaaaaagattttttgagacccttaa 18026833  T
Q  110 aaagacatgtcaacataggtagattatataactcaatgttttgcaatcccaagttcatctcccgctcacttacttcattgagacaacatatactttcaac 209  Q
    ||||||||||||   |||| ||| ||   ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  18026834 aaagacatgtcattgtaggcagagtacgcaactcaatgttttgcaatcccaagttcatcttccgctcacttacttcattgagacaacatatactttcaac 18026933  T
Q  210 attggaattttctaccttcaacttttccaaagcgacaaaatg 251  Q
    |||||||||  |||||  |||| |||||||||||||||||||    
T  18026934 attggaattacctaccagcaacctttccaaagcgacaaaatg 18026975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 10 - 239
Target Start/End: Complemental strand, 12146011 - 12145782
Alignment:
Q  10 attattctagaagtagagaaaacaatttccaatttttcacatcccttaattttcatcttagtaaggtttttgaggtaaaaagannnnnnnagacccttaa 109  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |         ||||||||    
T  12146011 attattatagaagtagagaaaacaaattccaatttttcacatcccttaatgttcatcttagtaaggtttttgagggaaaaataatttttgcaacccttaa 12145912  T
Q  110 aaagacatgtcaacataggtagattatataactcaatgttttgcaatcccaagttcatctcccgctcacttacttcattgagacaacatatactttcaac 209  Q
    |||||||||| | ||||||||||||||  |||||||||| |||||| || |||||||||| | ||||||||||||||||||||||| ||||| |||| ||    
T  12145911 aaagacatgttatcataggtagattatgcaactcaatgtcttgcaacccaaagttcatctgctgctcacttacttcattgagacaaaatatattttctac 12145812  T
Q  210 attggaattttctaccttcaacttttccaa 239  Q
     |||||||  | |||||||| |||||||||    
T  12145811 tttggaatcatgtaccttcagcttttccaa 12145782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 10 - 251
Target Start/End: Complemental strand, 11418721 - 11418462
Alignment:
Q  10 attattctagaagtagagaaaacaatttccaatttttcacatcccttaattttcatcttagtaaggtttttgaggtaaaaagannnnnnnagacccttaa 109  Q
    |||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||  ||    
T  11418721 attattatagaagtagagaaaacaaatttcaatttttcacatcccttaattttcatcttagtaaggtttttgaggtaacaagaatttttgagacccacaa 11418622  T
Q  110 aaagacatgtcaacataggtagattatataactcaatgttttgcaatcccaagttcat------ctccc------------gctcacttacttcattgag 191  Q
    |||||||||||||||| |||||| ||| |||||||||||||||||| |||||||||||      ||| |            |||||||||||||||||||    
T  11418621 aaagacatgtcaacattggtagagtatctaactcaatgttttgcaaccccaagttcatttgcagctcacttacttcattgagctcacttacttcattgag 11418522  T
Q  192 acaacatatactttcaacattggaattttctaccttcaacttttccaaagcgacaaaatg 251  Q
    |  ||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||    
T  11418521 aagacatatactttcaacattggaattacctaccttcaacctttccaaagcgacaaaatg 11418462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 10 - 239
Target Start/End: Complemental strand, 27376194 - 27375965
Alignment:
Q  10 attattctagaagtagagaaaacaatttccaatttttcacatcccttaattttcatcttagtaaggtttttgaggtaaaaagannnnnnnagacccttaa 109  Q
    |||||| |||||||||||||||||| |||||| |||| ||||| | ||||||| ||| | ||||| ||||||||  |||| ||       ||||||||||    
T  27376194 attattatagaagtagagaaaacaaattccaaatttttacatctcataattttgatcattgtaagttttttgagagaaaatgaatttttgagacccttaa 27376095  T
Q  110 aaagacatgtcaacataggtagattatataactcaatgttttgcaatcccaagttcatctcccgctcacttacttcattgagacaacatatactttcaac 209  Q
    |||||||||| | ||||||||||||||  |||||||||| |||||| || | |||||||| | ||||||||||||||||||||||| ||||| |||| ||    
T  27376094 aaagacatgttatcataggtagattatgcaactcaatgtcttgcaacccaatgttcatctgctgctcacttacttcattgagacaaaatatattttctac 27375995  T
Q  210 attggaattttctaccttcaacttttccaa 239  Q
     | |||||  | |||||||| |||||||||    
T  27375994 ttcggaataatgtaccttcagcttttccaa 27375965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 83
Target Start/End: Complemental strand, 27347434 - 27347361
Alignment:
Q  10 attattctagaagtagagaaaacaatttccaatttttcacatcccttaattttcatcttagtaaggtttttgag 83  Q
    |||||| |||||||||||||| |||||||||||||||||||||||  |||| | ||||| | ||||||||||||    
T  27347434 attattatagaagtagagaaagcaatttccaatttttcacatcccacaattattatctttgcaaggtttttgag 27347361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 26210361 - 26210420
Alignment:
Q  25 gagaaaacaatttccaatttttcacatcccttaattttcatcttagtaaggtttttgagg 84  Q
    ||||||||||||||||||||||||||||  |  ||||||||||| |||||||| ||||||    
T  26210361 gagaaaacaatttccaatttttcacatctatcgattttcatctttgtaaggttattgagg 26210420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 26237605 - 26237664
Alignment:
Q  25 gagaaaacaatttccaatttttcacatcccttaattttcatcttagtaaggtttttgagg 84  Q
    ||||||||||||||||||||||||||||| |  ||| ||||| | |||||||| ||||||    
T  26237605 gagaaaacaatttccaatttttcacatccatcgattctcatcgttgtaaggttattgagg 26237664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 28131936 - 28131895
Alignment:
Q  11 ttattctagaagtagagaaaacaatttccaatttttcacatc 52  Q
    ||||| ||||||| ||||||||||||| ||||||||||||||    
T  28131936 ttattatagaagtggagaaaacaattttcaatttttcacatc 28131895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 28510916 - 28510957
Alignment:
Q  11 ttattctagaagtagagaaaacaatttccaatttttcacatc 52  Q
    ||||| ||||||| ||||||||||||| ||||||||||||||    
T  28510916 ttattatagaagtggagaaaacaattttcaatttttcacatc 28510957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 28002188 - 28002148
Alignment:
Q  11 ttattctagaagtagagaaaacaatttccaatttttcacat 51  Q
    ||||| ||||||| ||||||||||||| |||||||||||||    
T  28002188 ttattatagaagtggagaaaacaattttcaatttttcacat 28002148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 11 - 206
Target Start/End: Complemental strand, 22391115 - 22390920
Alignment:
Q  11 ttattctagaagtagagaaaacaatttccaatttttcacatcccttaattttcatcttagtaaggtttttgaggtaaaaagannnnnnnagacccttaaa 110  Q
    ||||| |||||||||||||||||| |||||||||||||||||||  |||||| ||| | ||||| ||| ||||  | |||||       |||||||||||    
T  22391115 ttattatagaagtagagaaaacaaattccaatttttcacatcccacaatttttatcattgtaagatttctgagagataaagaacttttgagacccttaaa 22391016  T
Q  111 aagacatgtcaacataggtagattatataactcaatgttttgcaatcccaagttcatctcccgctcacttacttcattgagacaacatatactttc 206  Q
    ||||||||| | ||||||||||||||  |||||||||| |||||| || |||||||||| | ||||||||||||||||||||||| ||||| ||||    
T  22391015 aagacatgttatcataggtagattatgcaactcaatgtcttgcaacccaaagttcatctgctgctcacttacttcattgagacaaaatatattttc 22390920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 54998 - 55064
Alignment:
Q  17 tagaagtagagaaaacaatttccaatttttcacatcccttaattttcatcttagtaaggtttttgag 83  Q
    ||||||||||||||||||||||||||||||||||||||  |||||| |||    |||||||||||||    
T  54998 tagaagtagagaaaacaatttccaatttttcacatcccaaaatttttatcaccttaaggtttttgag 55064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 8693604 - 8693645
Alignment:
Q  11 ttattctagaagtagagaaaacaatttccaatttttcacatc 52  Q
    ||||| ||||||||||||||||||||| ||||||||||||||    
T  8693604 ttattatagaagtagagaaaacaattttcaatttttcacatc 8693645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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