View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17793_low_83 (Length: 268)
Name: NF17793_low_83
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_low_83 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 258
Target Start/End: Complemental strand, 4841251 - 4841011
Alignment:
| Q |
18 |
gatttatcatgcaataagctaacaggtgtcatcccttctcacgttggagacctacaacaaattaaagccttgaatctatcacataatcacttgtctggtc |
117 |
Q |
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||||||||||||||||| |||||||||| |||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
4841251 |
gatttatcatgcaataatttaacaggtgttatcccttcccaaattggagacctacaacaaattagagccttgaatctatcacataatcacttgtcaggtc |
4841152 |
T |
|
| Q |
118 |
ctattccaattactttttcaaatcttacccaaatagagagtcttgacttatcatacaataacttgagtggtaagataccaaatgaactaacccagttgaa |
217 |
Q |
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| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4841151 |
ccattccaatcactttttcaaatcttacccaaatagagagtcttgacttatcatacaataacttgagtggtaagataccaaatgaactaacccagttgaa |
4841052 |
T |
|
| Q |
218 |
ttttttagaaatcttcaatgtgtcatacaacaacctctctg |
258 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
4841051 |
ctttttagaaatcttcaatgtgtcatacaacaacctctctg |
4841011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 258
Target Start/End: Original strand, 5183613 - 5183853
Alignment:
| Q |
18 |
gatttatcatgcaataagctaacaggtgtcatcccttctcacgttggagacctacaacaaattaaagccttgaatctatcacataatcacttgtctggtc |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5183613 |
gatttatcatgcaataagctaacaggtgtcatcccttctcaaattggagacctacaacaaattaaagccttgaatctatcacataattacttgtctggtc |
5183712 |
T |
|
| Q |
118 |
ctattccaattactttttcaaatcttacccaaatagagagtcttgacttatcatacaataacttgagtggtaagataccaaatgaactaacccagttgaa |
217 |
Q |
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|||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| |||||| |
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| T |
5183713 |
ctattccaataactttttcaaaacttacccaaatagagagccttgacttatcatacaataacttgagtggtaagattccttatgaactaaccaagttgac |
5183812 |
T |
|
| Q |
218 |
ttttttagaaatcttcaatgtgtcatacaacaacctctctg |
258 |
Q |
| |
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| ||||||||||||||||||||||||||||||||| |||| |
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| T |
5183813 |
ctctttagaaatcttcaatgtgtcatacaacaacctttctg |
5183853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 18 - 258
Target Start/End: Original strand, 5174271 - 5174511
Alignment:
| Q |
18 |
gatttatcatgcaataagctaacaggtgtcatcccttctcacgttggagacctacaacaaattaaagccttgaatctatcacataatcacttgtctggtc |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5174271 |
gatttatcatgcaataagctaacaggtgtcatcccttctcaaattggagacctacaacaaattagagccttgaatctatcacataatcacttgtctggtc |
5174370 |
T |
|
| Q |
118 |
ctattccaattactttttcaaatcttacccaaatagagagtcttgacttatcatacaataacttgagtggtaagataccaaatgaactaacccagttgaa |
217 |
Q |
| |
|
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| | || |
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| T |
5174371 |
ccattccaatcactttttcaaatcttacccaaatagagagtcttgacttatcatacaatgacttgagtggtaagatacccaatgaactaacccagctaaa |
5174470 |
T |
|
| Q |
218 |
ttttttagaaatcttcaatgtgtcatacaacaacctctctg |
258 |
Q |
| |
|
||||| || |||||||||||||||||||||||| |||| |
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| T |
5174471 |
ctttttgtcaaccttcaatgtgtcatacaacaacctttctg |
5174511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 18 - 258
Target Start/End: Original strand, 5197012 - 5197252
Alignment:
| Q |
18 |
gatttatcatgcaataagctaacaggtgtcatcccttctcacgttggagacctacaacaaattaaagccttgaatctatcacataatcacttgtctggtc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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|
| T |
5197012 |
gatttatcatgcaataagctaacaggtgtcatcccttctcaaattggagacctacaacaaattagagccttgaatctatcacataatcacttgtcaggtc |
5197111 |
T |
|
| Q |
118 |
ctattccaattactttttcaaatcttacccaaatagagagtcttgacttatcatacaataacttgagtggtaagataccaaatgaactaacccagttgaa |
217 |
Q |
| |
|
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| | || |
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| T |
5197112 |
ccattccaatcactttttcaaatcttacccaaatagagagtcttgacttatcatacaatgacttgagtggtaagatacccaatgaactaacccagctaaa |
5197211 |
T |
|
| Q |
218 |
ttttttagaaatcttcaatgtgtcatacaacaacctctctg |
258 |
Q |
| |
|
||||| || |||||||||||||||||||||||| |||| |
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| T |
5197212 |
ctttttgtcaaccttcaatgtgtcatacaacaacctttctg |
5197252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 5215157 - 5215390
Alignment:
| Q |
18 |
gatttatcatgcaataagctaacaggtgtcatcccttctcacgttggagacctacaacaaattaaagccttgaatctatcacataatcacttgtctggtc |
117 |
Q |
| |
|
||||||||||| ||||| ||||||||| ||||||||||||| |||| |||| |||||| ||| ||||||||| ||||||||||||||||||||||||| |
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|
| T |
5215157 |
gatttatcatggaataacctaacaggtctcatcccttctcaaattggtcaccttcaacaagttagagccttgaacctatcacataatcacttgtctggtc |
5215256 |
T |
|
| Q |
118 |
ctattccaattactttttcaaatcttacccaaatagagagtcttgacttatcatacaataacttgagtggtaagataccaaatgaactaacccagttgaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5215257 |
ctattccaattactttttcaaatcttacccaaatagagagccttgacttatcatacaataacttgagtggtaagataccaaatgaactaacccagttgaa |
5215356 |
T |
|
| Q |
218 |
ttttttagaaatcttcaatgtgtcatacaacaac |
251 |
Q |
| |
|
|||||| || ||||||||| |||||||||||| |
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| T |
5215357 |
ctttttatcaaccttcaatgtatcatacaacaac |
5215390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 258
Target Start/End: Complemental strand, 4855757 - 4855517
Alignment:
| Q |
18 |
gatttatcatgcaataagctaacaggtgtcatcccttctcacgttggagacctacaacaaattaaagccttgaatctatcacataatcacttgtctggtc |
117 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||| |||| |||| |||| | ||| ||||||||| ||||||||||||||||||||||||| |
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|
| T |
4855757 |
gatttatcatggaataacctaacaggtgtcatcccttctcaaattggtcaccttcaaccagttagagccttgaacctatcacataatcacttgtctggtc |
4855658 |
T |
|
| Q |
118 |
ctattccaattactttttcaaatcttacccaaatagagagtcttgacttatcatacaataacttgagtggtaagataccaaatgaactaacccagttgaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
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|
| T |
4855657 |
ctattccaattactttttcaaatcttacccaaatagaaagccttgacttatcatacaataacttgagtggtaagataccttatgaactaaccaagttgac |
4855558 |
T |
|
| Q |
218 |
ttttttagaaatcttcaatgtgtcatacaacaacctctctg |
258 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||||| |||| |
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|
| T |
4855557 |
ctctttagaaatattcaatgtgtcatacaacaacctttctg |
4855517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 18 - 258
Target Start/End: Original strand, 5161330 - 5161570
Alignment:
| Q |
18 |
gatttatcatgcaataagctaacaggtgtcatcccttctcacgttggagacctacaacaaattaaagccttgaatctatcacataatcacttgtctggtc |
117 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||| |||| |||| |||||| || ||||||||| |||||||||||||||||||| |||| |
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|
| T |
5161330 |
gatttatcatgcaacaagctaacaggtactatcccttctcaaattgggcacctgcaacaagttttagccttgaacctatcacataatcacttgtcgggtc |
5161429 |
T |
|
| Q |
118 |
ctattccaattactttttcaaatcttacccaaatagagagtcttgacttatcatacaataacttgagtggtaagataccaaatgaactaacccagttgaa |
217 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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|
| T |
5161430 |
ctattccaattacgttttcaaatcttaccgaaatagagagccttgacttatcatacaataacttgagtggtaagataccttatgagctaacccagttgac |
5161529 |
T |
|
| Q |
218 |
ttttttagaaatcttcaatgtgtcatacaacaacctctctg |
258 |
Q |
| |
|
|||||| || |||||| ||||||||||||||||| |||| |
|
|
| T |
5161530 |
ctttttatcaaccttcaacgtgtcatacaacaacctttctg |
5161570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 86 - 258
Target Start/End: Original strand, 7143544 - 7143716
Alignment:
| Q |
86 |
cttgaatctatcacataatcacttgtctggtcctattccaattactttttcaaatcttacccaaatagagagtcttgacttatcatacaataacttgagt |
185 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| | |||||||| | |
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|
| T |
7143544 |
cttgaatctataacataatcacttgtcaggtcctattccaatcactttttccaatcttacccaaatagagagtcttgacttatcatagagtaacttgaat |
7143643 |
T |
|
| Q |
186 |
ggtaagataccaaatgaactaacccagttgaattttttagaaatcttcaatgtgtcatacaacaacctctctg |
258 |
Q |
| |
|
|||||| || | | |||||| || |||| ||| |||| |||||||||||||| ||||||||||| |||| |
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|
| T |
7143644 |
ggtaaggtagcttctcaactaagtcacttgacctttatagatatcttcaatgtgtcttacaacaacctttctg |
7143716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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