View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17793_low_86 (Length: 265)
Name: NF17793_low_86
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_low_86 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 23 - 251
Target Start/End: Original strand, 2746323 - 2746551
Alignment:
| Q |
23 |
cacatcatatagtgtatttacattaactttctacaacatctaaagcaaaataacaatgctcattaccttaactttaatatccaaagcctgataatatgga |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2746323 |
cacatcatatagtgtatttacattaactttctacaacatctaaagcaaaataacaatgctcattaccttaactttaatatccaaagcctgataatatgga |
2746422 |
T |
|
| Q |
123 |
tcagtgtcatactcaaagcataactttccaatgttccactgcatcaaccaaaataaccaacagagttaactaccataacttttgtctacataccnnnnnn |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2746423 |
tcagtgtcatactcaaagcataactttccaatgttccactgcatcaaccaaaataaccaacagagttaactaccataacttttgtctatataccaaaaaa |
2746522 |
T |
|
| Q |
223 |
ngtaacagaatcaatagctatttaggaga |
251 |
Q |
| |
|
|||||||||||||||||| ||||||||| |
|
|
| T |
2746523 |
agtaacagaatcaatagctgtttaggaga |
2746551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University