View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17793_low_9 (Length: 560)
Name: NF17793_low_9
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 467; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 10 - 541
Target Start/End: Complemental strand, 37375531 - 37375009
Alignment:
| Q |
10 |
agcataggcagaactgtctatatattcttgtacatgacgatgcaaatttaaattaatacatgaatgtataatcaatcaatactttgtagatttaaaatca |
109 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37375531 |
agcataggcagaactgtctatatattcttgtacatgataatgcaaatttaaattaatacatgaatgtataatcaatcaatactttgtagatttaaaatca |
37375432 |
T |
|
| Q |
110 |
tcatgattgttgtcaatgatatgataaaaatgttgagacagtaagttagtagtgccagtaccaagatcaacaccccaagcagcatactgctcatgaagag |
209 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37375431 |
tcatgat-------------atgataaaaatgttgagacagtaagttagtagtgccagtaccaagatcaacaccccaagcagcatactgctcatgaagag |
37375345 |
T |
|
| Q |
210 |
atctcaaaaaagctctccctgctcctaaccttgtatttacactcatgaaaccattagacatccatgaacaacgcctttgttggattgctatgtcttttgc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37375344 |
atctcaaaaaagctctccctgctcctaaccttgtatttacactcatgaaaccattagacatccatgaacaacgcctttgttggattgctatgtcttttgc |
37375245 |
T |
|
| Q |
310 |
ataccatactcgaccaagttcttgataagcagcaccctagtatatcacaagaaaaggtcaataagaacttttgttttagattgtctctctgaatttgctt |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37375244 |
ataccatactcgaccaagttcttgataagcagcaccctagtatatcacaagaaaaggtcaataagaacttttgttttagattgtctctctgaatttgctt |
37375145 |
T |
|
| Q |
410 |
attttaaagttgcttatttgagttaatctactgacatacttgtgaatttataatacataaataa----atagatgataaagttatagcagaaaatcaaaa |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
37375144 |
attttaaagttgcttatttgagttaatctactgacatacttgtgaatttataatacataaataaatatatagatgataaagttatagcagaaaatcaaaa |
37375045 |
T |
|
| Q |
506 |
taataccgttgctgtatctaggataggggtgtttgc |
541 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
37375044 |
taataccgttgctgtatctaggataggggtgtttgc |
37375009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 10 - 541
Target Start/End: Complemental strand, 37382881 - 37382351
Alignment:
| Q |
10 |
agcataggcagaactgtctatatattcttgtacatgacgatgcaaatttaaattaatacatgaatgtataatcaatcaatactttgtagatttaaaatca |
109 |
Q |
| |
|
|||||||||| |||||| ||||| |||||||||||| |||||| | |||||||||||||||||||||||||||||||| |||||| ||| ||||||| |
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|
| T |
37382881 |
agcataggcaaaactgtgtatat--tcttgtacatgataatgcaattccaaattaatacatgaatgtataatcaatcaatagtttgtaaattcaaaatca |
37382784 |
T |
|
| Q |
110 |
tcatgattgttgtcaatgatatgataaaaatgttgagacagtaagttagtagtgccagtaccaagatcaacaccccaagcagcatactgctcatgaagag |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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|
| T |
37382783 |
tcatgattgttgtcaatgatatgataaaaatgttgtgacagtaagttagtagtgccagtaccaagatcaacaccccaagcagcatactgtgcataaagag |
37382684 |
T |
|
| Q |
210 |
atctcaaaaaagctctccctgctcctaaccttgtatttacactcatgaaaccattagacatccatgaacaacgcctttgttggattgctatgtcttttgc |
309 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
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|
| T |
37382683 |
atctcaaaaaagctcttcctgctcctaactttgtatttacactcatgaaaccattagacatccatgcacaacgcctttcttggattgctatgtcttttgc |
37382584 |
T |
|
| Q |
310 |
ataccatactcgaccaagttcttgataagcagcaccctagtatatcacaagaaaaggtcaataagaacttttgttttagat----tgtctctctgaattt |
405 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||| | ||||||| |||||| |
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|
| T |
37382583 |
ataccatactcgaccagattcttgataagcagcaccctaggaaatcacgtgaaaaggtcaataagaacttttgttttaggttacgtgtctctttgaattg |
37382484 |
T |
|
| Q |
406 |
gcttattttaaagttgcttatttgagttaatctactgacatacttgtgaatttataatacataaataaatagatgataaagttatagcagaaaatcaaaa |
505 |
Q |
| |
|
||||||||| || | ||||||||||||| ||| ||| |||||| ||||||||||||||||| || ||||| || ||||||||||||||||| |||||||| |
|
|
| T |
37382483 |
gcttattttgaattcgcttatttgagtttatccacttacatacatgtgaatttataatacagaattaaattgaagataaagttatagcagagaatcaaaa |
37382384 |
T |
|
| Q |
506 |
taataccgttgctgtatctaggataggggtgtttgc |
541 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |
|
|
| T |
37382383 |
taataccgt---tgtatctaggataggggtgtttgc |
37382351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 87 - 541
Target Start/End: Complemental strand, 37360650 - 37360187
Alignment:
| Q |
87 |
aatactttgtagatttaaaatcatcatgattgttgtcaatgatatgataaaaatgttgagacagtaagttagtagtgccagtaccaagatcaacacccca |
186 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||| |
|
|
| T |
37360650 |
aatactttgtagatttcaaatcatcatgattgttgtcaataacatgataaaaatgttgagacagttagttagttgtgcgagtaccaagatcaacacccca |
37360551 |
T |
|
| Q |
187 |
agcagcatactgctcatgaagagatctcaaaaaagctctccctgctcctaaccttgtatttacactcatgaaaccattagacatccatgaacaacgcctt |
286 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||| |||| ||||||||| ||||||||||||||||||||||||| | ||||||| |||||||||| |
|
|
| T |
37360550 |
agcagcatactgctcatgaagggatctcaaaaatgctttcccggctcctaacgttgtatttacactcatgaaaccatttgtcatccatccacaacgcctt |
37360451 |
T |
|
| Q |
287 |
tgttggattgctatgtcttttgcataccatactcgaccaagttcttgataagcagcaccctagtatatcacaagaaaaggtcaataag---aacttttgt |
383 |
Q |
| |
|
| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||| || |
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|
| T |
37360450 |
tcttggattgctatgtcttttgcatgccatactcgaccagattcttgataagcagcaccctgtgatatcgcaagaaaaggtcaataaggataaaaaaaaa |
37360351 |
T |
|
| Q |
384 |
tttagat----tgtctctctgaatttgcttattttaaagttgcttatttgagttaatctactgacatacttgtgaatttataatacataa--ataaatag |
477 |
Q |
| |
|
||||| ||||||| |||||| |||||||| || ||||||||| ||||| ||||||||| |||||||||||| |||||| ||||| ||| |||| |
|
|
| T |
37360350 |
aatagattatgtgtctctttgaattgccttattttgaaattgcttattcgagtttatctactgatatacttgtgaatgtataatgcataaatatatatag |
37360251 |
T |
|
| Q |
478 |
atgataaagttatagcagaaaatcaaaataataccgttgctgtatctaggataggggtgtttgc |
541 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
37360250 |
aagataaagttatagcagaaaatcaaaataataccgttgttgtatctaggataggggtgtttgc |
37360187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 87 - 541
Target Start/End: Original strand, 37367412 - 37367877
Alignment:
| Q |
87 |
aatactttgtagatttaaaatcatcatgattgttgtcaatgatatgataaaaatgttgagacagtaagttagtagtgccagtaccaagatcaacacccca |
186 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||| | |||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||| |
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|
| T |
37367412 |
aatactttttagatttcaaatcatcatgattgttgtcaataacatgataaaaatgttgagacagttagttagttgtgcgagtaccaagatcaacacccca |
37367511 |
T |
|
| Q |
187 |
agcagcatactgctcatgaagagatctcaaaaaagctctccctgctcctaaccttgtatttacactcatgaaaccattagacatccatgaacaacgcctt |
286 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||| |||| ||||||||| ||||||||||||||||||||||||| | ||||||| |||||||||| |
|
|
| T |
37367512 |
agcagcatactgctcatgaagggatctcaaaaatgctttcccggctcctaacgttgtatttacactcatgaaaccatttgtcatccatccacaacgcctt |
37367611 |
T |
|
| Q |
287 |
tgttggattgctatgtcttttgcataccatactcgaccaagttcttgataagcagcaccctagtatatcacaagaaaaggtcaataag-----aactttt |
381 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||| || |
|
|
| T |
37367612 |
tcttggattgctatgtcttttgcatgccatactcgacctgattcttgataagcagcaccctgtgatatcgcaagaaaaggtcaataaggataaaaaaaaa |
37367711 |
T |
|
| Q |
382 |
gttttaga----ttgtctctctgaatttgcttattttaaagttgcttatttgagttaatctactgacatacttgtgaatttataatacataa--ataaat |
475 |
Q |
| |
|
||||| ||||||| |||||| |||||||| || ||||||||| ||||| ||||||||| ||||||||| || |||||| ||||| ||| || |
|
|
| T |
37367712 |
aaattagaatatgtgtctctttgaattgccttattttgaaattgcttattcgagtttatctactgatatacttgtgtatgtataatgcataaatatatat |
37367811 |
T |
|
| Q |
476 |
agatgataaagttatagcagaaaatcaaaataataccgttgctgtatctaggataggggtgtttgc |
541 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
37367812 |
agaagataaagttatagcagaaaatcaaaataataccgttgttgtatctaggataggggtgtttgc |
37367877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 167 - 279
Target Start/End: Original strand, 37386342 - 37386455
Alignment:
| Q |
167 |
gtaccaagatcaacacccc-aagcagcatactgctcatgaagagatctcaaaaaagctctccctgctcctaaccttgtatttacactcatgaaaccatta |
265 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||| |||||| ||| |||||| ||||||||||| || |
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|
| T |
37386342 |
gtaccaagatcaacacccccaagcagcatactgctcataaagggatctcaaaaaagctctccctgcacctaacgttgcatttactctcatgaaaccgttt |
37386441 |
T |
|
| Q |
266 |
gacatccatgaaca |
279 |
Q |
| |
|
|||||||||||| |
|
|
| T |
37386442 |
tgcatccatgaaca |
37386455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 167 - 351
Target Start/End: Original strand, 41229855 - 41230039
Alignment:
| Q |
167 |
gtaccaagatcaacaccccaagcagcatactgctcatgaagagatctcaaaaaagctctccctgctcctaaccttgtatttacactcatgaaaccattag |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||| ||||| |||||| |||||||||||||||||| |
|
|
| T |
41229855 |
gtaccaagatcaacaccccaagcagcatactgctcataaagggatctcaaaaacgctctccctgcccctaatgttgtatctacactcatgaaaccattct |
41229954 |
T |
|
| Q |
267 |
acatccatgaacaacgcctttgttggattgctatgtcttttgcataccatactcgaccaagttcttgataagcagcaccctagta |
351 |
Q |
| |
|
||||||| |||| |||| | ||||||||||||||||||||| ||| || |||||| ||||||||||||| | |||||||| |
|
|
| T |
41229955 |
gcatccatccacaagctctttttgggattgctatgtcttttgcatgccacacacgaccagattcttgataagcaccgccctagta |
41230039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 41229716 - 41229754
Alignment:
| Q |
59 |
aaattaatacatgaatgtataatcaatcaatactttgta |
97 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
41229716 |
aaattaacacatgaatgtataatcaatcaatactttgta |
41229754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 166 - 315
Target Start/End: Complemental strand, 39243922 - 39243773
Alignment:
| Q |
166 |
agtaccaagatcaacaccccaagcagcatactgctcatgaagagatctcaaaaaagctctccctgctcctaaccttgtatttacactcatgaaaccatta |
265 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||| ||| ||| || |||||||| ||| | || || || ||| | |||||||||||||||||||||| | |
|
|
| T |
39243922 |
agtaccaaaatcaacaccccattcagcatactgcacataaagggacctcaaaaaggctttgccagcacccaacgtagtatttacactcatgaaaccatga |
39243823 |
T |
|
| Q |
266 |
gacatccatgaacaacgcctttgttggattgctatgtcttttgcatacca |
315 |
Q |
| |
|
| |||||| |||| ||||| |||| ||||||||||||||||||| |
|
|
| T |
39243822 |
gtcatccagccacaagccctttcagggatccctatgtcttttgcatacca |
39243773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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