View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17793_low_96 (Length: 248)
Name: NF17793_low_96
Description: NF17793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17793_low_96 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 13 - 248
Target Start/End: Complemental strand, 44225298 - 44225063
Alignment:
| Q |
13 |
aaccatacagatttgtaactgttactcaattcgctgaggcatttcaatccttccatattggtaggaaacttgctgaggagctttccgtaccatttgacaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44225298 |
aaccatacagatttgtaactgttactcaattcgctgaggcgtttcaatccttccatattggtaggaaacttgctgaggagctttccgtaccatttgacaa |
44225199 |
T |
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| Q |
113 |
gacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaagacggagcttttaaaggctaacttctcaagagagtatttgctcatgaaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44225198 |
gacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaagacggagcttttaaaggctaacttctcaagagagtatttgctcatgaaa |
44225099 |
T |
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| Q |
213 |
aggaattcgtttgtttacatcttcaagctaactcag |
248 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
44225098 |
aggaattcgtttgtttacatcttcaagctaactcag |
44225063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 248
Target Start/End: Complemental strand, 44236112 - 44235877
Alignment:
| Q |
13 |
aaccatacagatttgtaactgttactcaattcgctgaggcatttcaatccttccatattggtaggaaacttgctgaggagctttccgtaccatttgacaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44236112 |
aaccatacagatttgtaactgttactcaattcgctgaggcgtttcaatccttccatattggtaggaaacttgctgaggagctttccgtaccatttgacaa |
44236013 |
T |
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| Q |
113 |
gacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaagacggagcttttaaaggctaacttctcaagagagtatttgctcatgaaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44236012 |
gacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaagacggagcttttaaaggctaacttctcaagagagtatttgctcatgaaa |
44235913 |
T |
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| Q |
213 |
aggaattcgtttgtttacatcttcaagctaactcag |
248 |
Q |
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|| ||||| ||||||||||||||||||||||||||| |
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| T |
44235912 |
agaaattcctttgtttacatcttcaagctaactcag |
44235877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 13 - 248
Target Start/End: Complemental strand, 44213137 - 44212902
Alignment:
| Q |
13 |
aaccatacagatttgtaactgttactcaattcgctgaggcatttcaatccttccatattggtaggaaacttgctgaggagctttccgtaccatttgacaa |
112 |
Q |
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|||||||| ||| |||||||||||||||||| || |||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
44213137 |
aaccataccgatatgtaactgttactcaatttgccgaggcatttcaatcattccatattggtgggaaacttgctgaggagctttccataccatttgacaa |
44213038 |
T |
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| Q |
113 |
gacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaagacggagcttttaaaggctaacttctcaagagagtatttgctcatgaaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44213037 |
gacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaagacggagcttttaaaggctaacttctcaagagagtatttgctcatgaaa |
44212938 |
T |
|
| Q |
213 |
aggaattcgtttgtttacatcttcaagctaactcag |
248 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
44212937 |
aggaattcgtttgtttacatcttcaagctaactcag |
44212902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 13 - 239
Target Start/End: Original strand, 2884632 - 2884858
Alignment:
| Q |
13 |
aaccatacagatttgtaactgttactcaattcgctgaggcatttcaatccttccatattggtaggaaacttgctgaggagctttccgtaccatttgacaa |
112 |
Q |
| |
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|||||||||| |||||||||||||||||||| ||||||||||||||||| | |||| |||| |||||| | || |||||| | | ||||||||||| |
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| T |
2884632 |
aaccatacaggtttgtaactgttactcaatttgctgaggcatttcaatcataccatgttggaaggaaaacaggagatgagcttgcaattccatttgacaa |
2884731 |
T |
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| Q |
113 |
gacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaagacggagcttttaaaggctaacttctcaagagagtatttgctcatgaaa |
212 |
Q |
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| | |||| |||||||| || || || || ||| |||| ||| | ||||||| || || |||||||||||||||||||||||||||||||| |||||| |
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| T |
2884732 |
gtctaagaatcatccagcagcattaacaactaaaaagtacggtgttaacaagaaagaactgttaaaggctaacttctcaagagagtatttgcttatgaaa |
2884831 |
T |
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| Q |
213 |
aggaattcgtttgtttacatcttcaag |
239 |
Q |
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|| ||||| |||||||||||||||||| |
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| T |
2884832 |
agaaattcctttgtttacatcttcaag |
2884858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 239
Target Start/End: Complemental strand, 2899928 - 2899702
Alignment:
| Q |
13 |
aaccatacagatttgtaactgttactcaattcgctgaggcatttcaatccttccatattggtaggaaacttgctgaggagctttccgtaccatttgacaa |
112 |
Q |
| |
|
|||||||||| ||| |||||||||||||||| ||||||||||||||||| | |||| |||| |||||| || |||||| | | ||||||||||| |
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| T |
2899928 |
aaccatacaggtttttaactgttactcaatttgctgaggcatttcaatcataccatgttggaaggaaaacaagagatgagcttgcaattccatttgacaa |
2899829 |
T |
|
| Q |
113 |
gacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaagacggagcttttaaaggctaacttctcaagagagtatttgctcatgaaa |
212 |
Q |
| |
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| | |||| |||||||| || || || || ||| |||| ||| | ||||||| || || ||||||||||||||||||||||| |||||||| |||||| |
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| T |
2899828 |
gtctaagaatcatccagcagcattaacaactaaaaagtacggtgttaacaagaaagaactgttaaaggctaacttctcaagagaatatttgcttatgaaa |
2899729 |
T |
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| Q |
213 |
aggaattcgtttgtttacatcttcaag |
239 |
Q |
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|||||||| |||||||||||||||||| |
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| T |
2899728 |
aggaattcctttgtttacatcttcaag |
2899702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 102 - 220
Target Start/End: Original strand, 2874853 - 2874971
Alignment:
| Q |
102 |
ccatttgacaagacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaagacggagcttttaaaggctaacttctcaagagagtatt |
201 |
Q |
| |
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|||||||||||| | || | |||||||| || || || || ||| |||||||| | ||||||| ||| || |||||||||||| |||||||||||| || |
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| T |
2874853 |
ccatttgacaagtcaaataatcatccagcagcattaacaactaaaaagtatggtgttaacaagaaggaactattaaaggctaacatctcaagagagtttt |
2874952 |
T |
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| Q |
202 |
tgctcatgaaaaggaattc |
220 |
Q |
| |
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|||| |||||||| ||||| |
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| T |
2874953 |
tgcttatgaaaagaaattc |
2874971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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