View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17794_low_1 (Length: 568)
Name: NF17794_low_1
Description: NF17794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17794_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 538; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 1 - 550
Target Start/End: Original strand, 45345002 - 45345551
Alignment:
| Q |
1 |
tggcttgatcattccccaccagactgtctcctttgcccaaattaggatggttttgttggtcttccatctcactttcaaggtcaccaccacaaattgcttc |
100 |
Q |
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| T |
45345002 |
tggcttgatcattccccaccagactgtctcctttgcccaaattaggatggttttgttggtcttccatctcactttcaaggtcaccaccacaaattgcttc |
45345101 |
T |
|
| Q |
101 |
gacaggtcgaacaatatcctgtctcagtgataagttttctctatctgaaacagttttttggttttgatcacctccattatcaaaatgacaaccacttaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
45345102 |
gacaggtcgaacaatatcctgtctcagtgataagttttctcgatctgaaacagttttttggttttgatcacctccattatcaaaatgacagccacttaaa |
45345201 |
T |
|
| Q |
201 |
accaaattttcatccctttgtttaccattacctgctacttctctgaaccttgattctactctgagattattcaggattccttgagttctttcttgtggca |
300 |
Q |
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| T |
45345202 |
accaaattttcatccctttgtttaccattacctgctacttctctgaaccttgattctactctgagattattcaggattccttgagttctttcttgtggca |
45345301 |
T |
|
| Q |
301 |
aagacagcacactgcttggtggcatccatgacttttcctgtctttctgtttgcaaataaagtgaactaatgaacatatgaactcagcgtagtcaacgaat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45345302 |
aagacagcacactgcttggtggcatccatgacttttcctgtctttctgtttgcaaataaagtgaactaatgaacatatgaactcagcgtagtcaacgaat |
45345401 |
T |
|
| Q |
401 |
agtacgatttccattcctctagtgaaggcacgaagatgtaacaaaaggaacacgagtcatattggtgctacaagggcaatttaaatatctacctgcaccg |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45345402 |
agtacgatttccattcctctagtgaaggcacgaagatgtaacaaaaggaacacgagtcatattggtgctacaagggcaatttaaatatctacctgcaccg |
45345501 |
T |
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| Q |
501 |
ctaataggtgtagttcggattgctgagatttgttgtgacggaggtccact |
550 |
Q |
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| T |
45345502 |
ctaataggtgtagttcggattgccgagatttgttgtgacggaggtccact |
45345551 |
T |
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