View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17794_low_2 (Length: 551)
Name: NF17794_low_2
Description: NF17794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17794_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 10 - 472
Target Start/End: Complemental strand, 38906915 - 38906453
Alignment:
| Q |
10 |
gacatcatccatctgttttcagtggctcccaatttgggaagaacaatatctggcaatggaagagaaatgttctttgttgaaccattcacttgaacaaagg |
109 |
Q |
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| T |
38906915 |
gacatcatacatctgtttttagaggctcccaatttgggaagaacaatatctggcaatggaagagaaatgttctttgttgaaccattcacttgaacaaagg |
38906816 |
T |
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| Q |
110 |
gatccatcagaagctcctttgccgacaatctttcggatgctggaacaatacatttttcaataaatgattttatctttggatctatcactttagaaagagc |
209 |
Q |
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| T |
38906815 |
ggtccatcagaagctcctttgccgacaatctttcggatgctggaacaatacatttttcaataaatgattttatctttggatctatcactttagaaagagc |
38906716 |
T |
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| Q |
210 |
agcaggctttataccctgcagaatgatatattgtgaatgaccatgtaacccagtaatatcctgcggnnnnnnnnnctccataaataccacatacttacag |
309 |
Q |
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| T |
38906715 |
agcaggctttataccctgcagaatgatatattgtgaatgaccatgtaatccagtaatatcctgcgaaaaaaaaaacttcataaataccacacacttacag |
38906616 |
T |
|
| Q |
310 |
atgaaactttcttgtatatctgcgctgagtttctgcattcactataaggatactcggcagtaaccaactcaagcatgcacataccaaatgaatatatgtc |
409 |
Q |
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| T |
38906615 |
atgaaactttcttgtatatctgcgctgagtttctgcattcactataaggatactcggcagtaaccaactcaagcatgcacataccaaatgaatatatgtc |
38906516 |
T |
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| Q |
410 |
agctaattcgttgtaattttcatcatacatttcgggtgccataaactccggagttcctaccag |
472 |
Q |
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| T |
38906515 |
agctaattcgttgtaattttcatcatacatttcgggtgccataaactccggagttcctaccag |
38906453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 470 - 536
Target Start/End: Complemental strand, 38906413 - 38906347
Alignment:
| Q |
470 |
cagcaatgcgacaaaacaacaataaatacggttcttatataattcctgatgctatgtgatggtaaaa |
536 |
Q |
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| T |
38906413 |
cagcaatgcgacaaaacaacaataactacggttcttatataattcctgatgctatgtgatggtaaaa |
38906347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 301 - 468
Target Start/End: Complemental strand, 43707838 - 43707671
Alignment:
| Q |
301 |
tacttacagatgaaactttcttgtatatctgcgctgagtttctgcattcactataaggatactcggcagtaaccaactcaagcatgcacataccaaatga |
400 |
Q |
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| T |
43707838 |
tacttacagatgaaactttcttgtatatctgagctgagtttctacattctctataaggatactgagaagtagccaactccagcatgcacattccaaaaga |
43707739 |
T |
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| Q |
401 |
atatatgtcagctaattcgttgtaattttcatcatacatttcgggtgccataaactccggagttccta |
468 |
Q |
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| T |
43707738 |
atatatgtcggctaattcattataatcttcgtcgtacagttcaggcgccataaactccggagttccta |
43707671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 35 - 229
Target Start/End: Complemental strand, 43708107 - 43707913
Alignment:
| Q |
35 |
ctcccaatttgggaagaacaatatctggcaatggaagagaaatgttctttgttgaaccattcacttgaacaaagggatccatcagaagctcctttgccga |
134 |
Q |
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|||| ||||| || |||||||||||||| |||||||||| | |||||| |||| |||||||| || ||| || |||||||||||||||||||| || |
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| T |
43708107 |
ctccgaatttaggtagaacaatatctggtaatggaagaggacgattctttactgaaaaattcacttcaagaaaagggtccatcagaagctcctttgctga |
43708008 |
T |
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| Q |
135 |
caatctttcggatgctggaacaatacatttttcaataaatgattttatctttggatctatcactttagaaagagcagcaggctttataccctgca |
229 |
Q |
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| T |
43708007 |
taatctttgagatgctgggacaagacatttctcaataaatgattttatttctggatctttgatcgtagaaagagaaactggctttatgccctgca |
43707913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 303 - 418
Target Start/End: Original strand, 47353666 - 47353781
Alignment:
| Q |
303 |
cttacagatgaaactttcttgtatatctgcgctgagtttctgcattcactataaggatactcggcagtaaccaactcaagcatgcacataccaaatgaat |
402 |
Q |
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|||||||| |||||||||||||| ||||| |||| | ||||||||||||||||||||||| || |||| || | | |||||||||||| |||| |
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| T |
47353666 |
cttacagaagaaactttcttgtagatctgtgctggatggctgcattcactataaggatactcaaatgtgaccatttctaatacgcacataccaaaggaat |
47353765 |
T |
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| Q |
403 |
atatgtcagctaattc |
418 |
Q |
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| T |
47353766 |
atatgtcaactaattc |
47353781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 467
Target Start/End: Original strand, 47005430 - 47005554
Alignment:
| Q |
343 |
tgcattcactataaggatactcggcagtaaccaactcaagcatgcacataccaaatgaatatatgtcagctaattcgttgtaattttcatcatacatttc |
442 |
Q |
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||||||||||||||||||| || || |||| ||| | |||||||| ||||| || ||||||||| | ||||| ||||||| || ||||||| ||| |
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| T |
47005430 |
tgcattcactataaggatattcaaaggtgaccatctccaaaatgcacattccaaaagagtatatgtcaaccaattcattgtaatcctcttcatacacttc |
47005529 |
T |
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| Q |
443 |
gggtgccataaactccggagttcct |
467 |
Q |
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| T |
47005530 |
tggtgccataaactcaggtgttcct |
47005554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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