View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17794_low_3 (Length: 507)
Name: NF17794_low_3
Description: NF17794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17794_low_3 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 5e-94; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 305 - 507
Target Start/End: Complemental strand, 11663854 - 11663652
Alignment:
| Q |
305 |
ttgaaaggctatgatatgttgtaatcttcagatctttcaagtgttgatatgtttgtgcttttgtttgttaaagtatgaaagtttaagttgtttgtgataa |
404 |
Q |
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| T |
11663854 |
ttgaaaggctatgacatgttgtaatcttcagatctttcaagtgttgatatgtttgtgctttcgtttgttaaagtatgaaagtttaagtgatttgtgataa |
11663755 |
T |
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| Q |
405 |
attgataatgccttaagtcgcctattattgagtgctccggtactagattgcaaccttactgcattgtcatgttcctttctttttgattctgaaccttcca |
504 |
Q |
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| T |
11663754 |
actgataatgccttaagttgcctattattgagtgctccggtactagattgcaaccttactgcattgtcatgttcctttctttttgattctgaaccttcta |
11663655 |
T |
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| Q |
505 |
tag |
507 |
Q |
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||| |
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| T |
11663654 |
tag |
11663652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 149 - 262
Target Start/End: Complemental strand, 11665574 - 11665461
Alignment:
| Q |
149 |
cgactagatagcttgcaatcccttttgtccaagctccctgtaaagtgagtattcagctggtgtttatcctgattaagaaagaatggtgctattacagcag |
248 |
Q |
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| T |
11665574 |
cgactagatagcttgcaatcccttttgtcaaagctccctgtaaagtgagtattcagctggtgtttatcctgattaagaaaggatggtgctattacagcag |
11665475 |
T |
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| Q |
249 |
tgcaatgagtacct |
262 |
Q |
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| T |
11665474 |
tgcaatgaggacct |
11665461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 263 - 308
Target Start/End: Complemental strand, 11664854 - 11664809
Alignment:
| Q |
263 |
attgtatgttcccatcctattttaattgtctttgctaattttttga |
308 |
Q |
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| T |
11664854 |
attgtatgttcccattctattttaattgtctttgctaattttttga |
11664809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 118; Significance: 5e-60; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 305 - 438
Target Start/End: Original strand, 21695025 - 21695158
Alignment:
| Q |
305 |
ttgaaaggctatgatatgttgtaatcttcagatctttcaagtgttgatatgtttgtgcttttgtttgttaaagtatgaaagtttaagttgtttgtgataa |
404 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
21695025 |
ttgaaaagctatgatatgttgtaatcttcagatctttcaagtgttgatatgtttgtgctttcgtttgttaaagtatgaaagtttaagtggtttgtgataa |
21695124 |
T |
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| Q |
405 |
attgataatgccttaagtcgcctattattgagtg |
438 |
Q |
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| T |
21695125 |
actgataatgccttaagtcgcctattattgagtg |
21695158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 149 - 247
Target Start/End: Original strand, 21693201 - 21693299
Alignment:
| Q |
149 |
cgactagatagcttgcaatcccttttgtccaagctccctgtaaagtgagtattcagctggtgtttatcctgattaagaaagaatggtgctattacagca |
247 |
Q |
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| T |
21693201 |
cgactagatagcttgcaatcccttttgtcaaagctccctgtaaagtgagtattcagctgttgtttaccctgattaagaaagaatggtgctattacagca |
21693299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 56 - 123
Target Start/End: Original strand, 21708974 - 21709041
Alignment:
| Q |
56 |
gaaccaggtcatgcttccgcaattgcaaatactcaaactcgttttccttgacaatctcattaggatgt |
123 |
Q |
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| T |
21708974 |
gaaccaggtcatgcttccgcaattgcaaatactcaaactcgttttccttgacaatctcattaggatgt |
21709041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 446 - 503
Target Start/End: Original strand, 21695217 - 21695274
Alignment:
| Q |
446 |
actagattgcaaccttactgcattgtcatgttcctttctttttgattctgaaccttcc |
503 |
Q |
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| T |
21695217 |
actagattgcaaccttactgcattgtcatgttcctttctttttgattctgaaccttcc |
21695274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 263 - 308
Target Start/End: Original strand, 21693917 - 21693962
Alignment:
| Q |
263 |
attgtatgttcccatcctattttaattgtctttgctaattttttga |
308 |
Q |
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| T |
21693917 |
attgtatgttcccatcctattttaactgtctttgctaattttttga |
21693962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 21713572 - 21713441
Alignment:
| Q |
1 |
aaatatatatttggtgaatgtgatgatagacatagttcatctcaccaatataccagaaccaggtcatgcttccgcaattgcaaatactcaaactcgtttt |
100 |
Q |
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|||||||||||||||||||||||| || |||| ||||||||||||||| || |||||| ||||||| | ||| || || | ||||||||| || |
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| T |
21713572 |
aaatatatatttggtgaatgtgatcatgaacatcattcatctcaccaata--cctgaaccacaccatgctttctcaactggaagttctcaaactcagttc |
21713475 |
T |
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| Q |
101 |
ccttgacaatctcattaggatgtgtcccgaatac |
134 |
Q |
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| T |
21713474 |
tcttgacaatctcattgggatgtgtcctgaatac |
21713441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 21705959 - 21706089
Alignment:
| Q |
1 |
aaatatatatttggtgaatgtgatgatagacatagttcatctcaccaatataccagaaccaggtcatgcttccgcaattgcaaatactcaaactcgtttt |
100 |
Q |
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|||||||||||||||||||||||| || |||| ||| |||||| | |||||| ||||| |||||||||| ||| || || ||||||| |||| || |
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| T |
21705959 |
aaatatatatttggtgaatgtgatcatgaacatcattcttctcac--aaataccacaaccacatcatgcttcctcaactgaaagtactcaatctcgaatt |
21706056 |
T |
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| Q |
101 |
ccttgacaatctcattaggatgtgtcccgaatac |
134 |
Q |
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| T |
21706057 |
ccttcacaat-ttattgggatatgtcccgaatac |
21706089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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