View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17794_low_4 (Length: 328)
Name: NF17794_low_4
Description: NF17794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17794_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 311
Target Start/End: Complemental strand, 37317087 - 37316794
Alignment:
| Q |
18 |
tgtgggtaaggctcaaggaatatacacttcaatatcacaagaggagatgggactaatgatggtgatgaccatggcattcactgatggagatttcaatgga |
117 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37317087 |
tgtgggtaaggctcaaggaatttacacttcaatatcacaagaggagatgggactaatgatggtgatgaccatggcattcactgatggagatttcaatgga |
37316988 |
T |
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| Q |
118 |
agcacacttagcatattgggtagaaatatgatcatgagtgaacctgttagagaaatggccattgttggtggaactggggcttttcgttttgtacgtgggt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37316987 |
agcacacttagcatattgggtagaaatatgatcatgagtgaacctgttagagaaatggccattgttggtggaactggggcttttcgttttgtacgtgggt |
37316888 |
T |
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| Q |
218 |
atgctcaagctaaattttattccgttgattacactaaaggagatgccattgtggagtatgatgtattcgtattccattattagctaggtgtatt |
311 |
Q |
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| T |
37316887 |
atgctcaagctaaattttattccgttgattacactaaaggagatgccattgtggagtatgatgtattcgtattccattattagctaggtgtatt |
37316794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 306
Target Start/End: Complemental strand, 37320666 - 37320378
Alignment:
| Q |
18 |
tgtgggtaaggctcaaggaatatacacttcaatatcacaagaggagatgggactaatgatggtgatgaccatggcattcactgatggagatttcaatgga |
117 |
Q |
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||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
37320666 |
tgtgggtaaggctcaaggaatttacacctctatatcacaagaggagatgggactaatgatggtgatgaccatgacattcactgatggacatttcaatgga |
37320567 |
T |
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| Q |
118 |
agcacacttagcatattgggtagaaatatgatcatgagtgaacctgttagagaaatggccattgttggtggaactggggcttttcgttttgtacgtgggt |
217 |
Q |
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| T |
37320566 |
agcacacttagcatattgggtagaaatatgatcatgagtgaacctgttagagaaatggccattgttggtggaactggggcttttcgttttgtacgtggtt |
37320467 |
T |
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| Q |
218 |
atgctcaagctaaattttattccgttgattacactaaaggagatgccattgtggagtatgatgtattcgtattccattattagctaggt |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||| ||||| |
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| T |
37320466 |
atgctcaagctaaattttattccgttgattacactaaaggagatgccattgtggagtatgacatatttatgttccattattagttaggt |
37320378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 18 - 305
Target Start/End: Complemental strand, 37324647 - 37324360
Alignment:
| Q |
18 |
tgtgggtaaggctcaaggaatatacacttcaatatcacaagaggagatgggactaatgatggtgatgaccatggcattcactgatggagatttcaatgga |
117 |
Q |
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||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
37324647 |
tgtgggtaaggctcaaggaatttacacttctatatcacaagaggagatgggactaatgatggtgatgaccatggcattcactgatggacattttaatgga |
37324548 |
T |
|
| Q |
118 |
agcacacttagcatattgggtagaaatatgatcatgagtgaacctgttagagaaatggccattgttggtggaactggggcttttcgttttgtacgtgggt |
217 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| |||||||| | |
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| T |
37324547 |
agcacacttagcatattgggtagaaacatgatcatgagtgaacctgttagagaaatggccatagttggtggaaccggggcatttcgtttcgtacgtggat |
37324448 |
T |
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| Q |
218 |
atgctcaagctaaattttattccgttgattacactaaaggagatgccattgtggagtatgatgtattcgtattccattattagctagg |
305 |
Q |
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||||||| ||||| |||||||| |||||||| || |||||||||||| |||| || ||||| |||| || |||||||||||| |||| |
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| T |
37324447 |
atgctcaggctaagttttattcggttgattatacaaaaggagatgccgttgtagaatatgacatatttgtgttccattattagttagg |
37324360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 37306741 - 37306524
Alignment:
| Q |
19 |
gtgggtaaggctcaaggaatatacacttcaatatcacaagaggagatgggactaatgatggtgatgaccatggcattcactgatggagatttcaatggaa |
118 |
Q |
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|||||||| ||||||||||| ||| || |||||||||||| |||||||||||||||||||| ||||| ||| ||| | || ||||| || ||||||| |
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| T |
37306741 |
gtgggtaaagctcaaggaatttacgctgtaatatcacaagatgagatgggactaatgatggttatgacttgggcgttctcagagggagaatttaatggaa |
37306642 |
T |
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| Q |
119 |
gcacacttagcatattgggtagaaatatgatcatgagtgaacctgttagagaaatggccattgttggtggaactggggcttttcgttttgtacgtgggta |
218 |
Q |
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|||||||||| ||||||| ||| || |||||| ||||||||||| ||||||||||| | ||||||||||||||||||||||| | ||||| ||||| || |
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| T |
37306641 |
gcacacttagtatattggctaggaacatgatcgtgagtgaacctattagagaaatgcctattgttggtggaactggggctttcagatttgttcgtggtta |
37306542 |
T |
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| Q |
219 |
tgctcaagctaaatttta |
236 |
Q |
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||||||||| || ||||| |
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| T |
37306541 |
tgctcaagccaagtttta |
37306524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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