View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17795_high_10 (Length: 524)
Name: NF17795_high_10
Description: NF17795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17795_high_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 185 - 507
Target Start/End: Original strand, 24142037 - 24142359
Alignment:
| Q |
185 |
attatagcatagcggaattggaacaagccactattgctcaaggttacactatctagtataaaatgttgtcaaatataacactgtaacagaggaatgtgag |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24142037 |
attatagcatagcggaattggaacaagccactattgttccaggttacactatctagtataaaatgttgtcaaatataacactgtaacagaggaatgtgag |
24142136 |
T |
|
| Q |
285 |
caaatcgctattttctgagattcacaatcatcaaccttgcatcttactatgatgtgtgatcttttcaacaaattttattatttcatctccgacgacaata |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24142137 |
caaatcgctattttctgagattcacaatcatcaaccttgcatcttactatgatgtgtgatcttttcaacaaattttattatttcatctccgacgacaata |
24142236 |
T |
|
| Q |
385 |
atggacttgaagggcaaggtatggtcggaggacattgaaatcgtttttggtccaaaaatgatccaacagtcataaatgaagaacgaaagcacattgttta |
484 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24142237 |
atggacttgaacggcaaggtatggacggaggacattgaaattgtttttggtccaaaaatgatccaacagtcataaatgaagaacgaaagcacattgttta |
24142336 |
T |
|
| Q |
485 |
tcttatgaatgaatacttgtttc |
507 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
24142337 |
tcttatgaatgaatacttgtttc |
24142359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 24141905 - 24141942
Alignment:
| Q |
147 |
accaccgttggataacgagacaaagtcgggtgcaaaga |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24141905 |
accaccgttggataacgagacaaagtcgggtgcaaaga |
24141942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 24141732 - 24141771
Alignment:
| Q |
1 |
tgagggtattaaaaagtatttccaaatcatgttcttggta |
40 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
24141732 |
tgaggatattaaaaagtatttccaaatcatgttcttggta |
24141771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 258
Target Start/End: Original strand, 50322030 - 50322099
Alignment:
| Q |
189 |
tagcatagcggaattggaacaagccactattgctcaaggttacactatctagtataaaatgttgtcaaat |
258 |
Q |
| |
|
|||||||| |||||| |||||| ||||||||| || | | ||||| || ||||||||||| ||||||||| |
|
|
| T |
50322030 |
tagcatagtggaatttgaacaaaccactattgttctacgatacacaatttagtataaaatattgtcaaat |
50322099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University