View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17795_high_12 (Length: 497)
Name: NF17795_high_12
Description: NF17795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17795_high_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 140 - 481
Target Start/End: Complemental strand, 24561061 - 24560720
Alignment:
| Q |
140 |
tggtaggaggcatacaaagaaaaggttagatcgaactatatgcaaccaacaatggttagattcttgtgctgttatatctttttcatctttgatcaaactt |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
24561061 |
tggtaggaggcatacaaagaaaaggttagatcgaactatatgcaaccaacaatggttagattcttgtgctgttatatcttgttcatctttgatcaaactt |
24560962 |
T |
|
| Q |
240 |
agatcagatcattaccctttacttcttgattttcgaaccctaaacctacaaatagcctcaagctttaaatttcttaaaatgtggacattgcatgacacat |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24560961 |
agatcagatcattaccctttacttcttgattttcgaaccctaaacctacaaatagcctcaagctttaaatttcttaaaatgtggacattgcatgacacat |
24560862 |
T |
|
| Q |
340 |
gccataaggtgattgaagagagctggaatgttagaattcttggcagccctatgtatattctcagttctaaattaaagatggtcaaagagaaactcaaagt |
439 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24560861 |
gccataaggtgattgaagagagctggaatgttagaattcttggcagccctatgtatattctcagttctaaattaaagatggtcaaagagaaactcaaagt |
24560762 |
T |
|
| Q |
440 |
ctggaacaaagaagtctttggtaacattcatttgcaagtaac |
481 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24560761 |
ctggaacaaagaagtctttggtaacattcatttgcaagtaac |
24560720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 395
Target Start/End: Complemental strand, 34245792 - 34245697
Alignment:
| Q |
300 |
agctttaaatttcttaaaatgtggacattgcatgacacatgccataaggtgattgaagagagctggaatgttagaattcttggcagccctatgtat |
395 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || | ||||| || | |||||||| | |||||||| ||| ||||||| |||||| ||||| |
|
|
| T |
34245792 |
agctttaaatttcttaaaatgtggacgttgcacgattcctgccaaaaactcattgaagattgttggaatgtgagagttcttggtagccctttgtat |
34245697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University