View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17795_high_13 (Length: 491)
Name: NF17795_high_13
Description: NF17795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17795_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 21 - 479
Target Start/End: Original strand, 43164491 - 43164940
Alignment:
| Q |
21 |
agtgccatcggcatgaataaggaaaaatttcagattatgagaaatcgaaaaagcataaaaggttctatatatggtcatgtagcaaatgacataacttggc |
120 |
Q |
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| T |
43164491 |
agtgtcatcggcataaataaggaaaaatttcagattatgagaaatcgaaaaagcataaaaggttctatatatggtcatgtagcaaatgacataacttggc |
43164590 |
T |
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| Q |
121 |
cgggaaatcaaatcataaccaatctgtttttnnnnnnnnntataatattcatgaatgattattgggtatgctatctttcaaatgtttcatatataatctt |
220 |
Q |
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| T |
43164591 |
cgggaaatcaaatcataaccaatctgtttttttaaaaaa-tataatattcatgaatgattattgggtatgctatctttcaaatgtttcatatataatctt |
43164689 |
T |
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| Q |
221 |
aagtattgtactattgtgcgtgtattttctacattttgtgattaattatcgaaatgtgaatgtgtgaaacatgaataaaatgtcatttatttttgtttac |
320 |
Q |
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| T |
43164690 |
aggtattgt--------gtgtgtattttctacattttgtgattaattatcgaaatgtgaatgtgtgaaacataaataaaatgtcatttatttttgtttac |
43164781 |
T |
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| Q |
321 |
aactaaggtcaacgcctgcacatatgagcactttattctttcatgatacatgtaacaatatatcacgtcttaagctgccattttcctcatctatagttcc |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43164782 |
aactaaggtcaacgcctgcacatatgagcactttattctttcatgatacatgtaacaatatatcacgtcttaagctaccattttcctcatctatagttcc |
43164881 |
T |
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| Q |
421 |
atttcactaaagacaagcaactttttcacaagagaagaatgattgtctactagtattat |
479 |
Q |
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| T |
43164882 |
atttcacaaaagacaagcaactttttcacaagagaagaatgattgtctactagtattat |
43164940 |
T |
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