View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17795_high_17 (Length: 441)
Name: NF17795_high_17
Description: NF17795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17795_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 55118097 - 55117673
Alignment:
| Q |
1 |
atatgtggtgtattgttagcaaaccagcaaaacactggtgaaagttctgttttatatcaagtccttcgttgctaaggctagcagcatgtcctcacaaaca |
100 |
Q |
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| T |
55118097 |
atatgtggtgtattgttagcaaaccagcaaaacaccggtgaaagttctgttttatatcaagtccttcgttgctaaggctagcagcatgtcctcacaaaca |
55117998 |
T |
|
| Q |
101 |
taaacttttttagtatattttgatttcttcacaaaaactatctaaaaattatagtgtaactgtgcaattagtaatctaaaacaagcatgtttaactagta |
200 |
Q |
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| T |
55117997 |
taaacttttttagtatattttgatttcttcacaaaaactatctaaaaattatagtgtaactgtgtaattagtaatctaaaacaagcatgtttaactagta |
55117898 |
T |
|
| Q |
201 |
ttactaacatataataaccaaaatttgtctaaaaagctgttttaattcatcattgattaaaaatatatttgaattcatcatttattcattttataaaata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55117897 |
ttactaacatataataaccaaaatttgtctaaaaagctgttttaggtcatcattgattaaaaatatatttgaattcatcatttattcattttataaaata |
55117798 |
T |
|
| Q |
301 |
tgataagtgcatatcttacttttgatatgagtggtgctaatggtgtcaaaaaagagatatgagtggtgctttcattattgctgaagtgggacatggttcg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
55117797 |
tgataagtgcatatcttacttttgatatgagtggtgctaatggtgtcaaaaaagagatatgagtggtgctttcattattgctgaagtgggacatggatcg |
55117698 |
T |
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| Q |
401 |
tatcagaaaaaacacaaaactattt |
425 |
Q |
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| T |
55117697 |
tatcagaaaaaacacaaaactattt |
55117673 |
T |
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