View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17795_high_22 (Length: 403)
Name: NF17795_high_22
Description: NF17795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17795_high_22 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 215 - 403
Target Start/End: Original strand, 40877231 - 40877418
Alignment:
| Q |
215 |
gcttcttaataaatgttcttaggacactgattaacttgacctccttctaataaaagtaatgnnnnnnnn--ggtaccgtataattttttatttgaaataa |
312 |
Q |
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| T |
40877231 |
gcttcttaataaatgttcttaggacaccgattaacttgacct---tttaataaaagtaatgttttttttttggtacggtataattttttatttgaaataa |
40877327 |
T |
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| Q |
313 |
aacgattatagtaagtggtgggactatcatttttcttcgtgatctttctattgatatcgatcattagagcataggataccattttagagcc |
403 |
Q |
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| T |
40877328 |
aacgattatagtaagtggtgggactatcatttttcttcgtgatctttctattgatatcgatcattagagcataggataccattttagagcc |
40877418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 16 - 156
Target Start/End: Original strand, 40877032 - 40877172
Alignment:
| Q |
16 |
catagggggtgaaaactgcaattaaatctttattctttgatagtagtattttggcatgggaaatgctaacaagtacctcggcgacatttgataagaagtc |
115 |
Q |
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| T |
40877032 |
catagggggccaaaactgcaattaagtctttattctttgatagtagtattttggcatgggaaatgctaacaagtacctcggcggcatttgataagaagtc |
40877131 |
T |
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| Q |
116 |
ctaaatagaaactttattttagaaataatgcatctaaaatc |
156 |
Q |
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| T |
40877132 |
ctaaatagaaactttattttagaaataatgcatctaaaatc |
40877172 |
T |
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