View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17795_high_25 (Length: 386)
Name: NF17795_high_25
Description: NF17795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17795_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 375
Target Start/End: Complemental strand, 39676433 - 39676076
Alignment:
| Q |
18 |
tcttggtgctggaattggaagcaaggatccatgacaaagttaggtttcttatggctgggttgtcacaattcaacccctacttatgatgtcatgcatcgtc |
117 |
Q |
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| T |
39676433 |
tcttggtgctggaattggaagcaaggatccatgacaaagttaggtttcttatggctgggttgtcacaattcaacccctacttatgatgtcatgcatcgtc |
39676334 |
T |
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| Q |
118 |
gacgtatgttgcaatctaatacttgtaccatatgcatgaatgacaacgagtcttccannnnnnncaatcacactaatagttttaatttcctaaagtcgaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39676333 |
gacgtatgttgcaatctaatacttgtaccatatgcatgaatgacaacgagtcttccatttttttcaatcacactaatagttttaatttcctaaagtcgaa |
39676234 |
T |
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| Q |
218 |
tgccattggagattctagctccattttccttgctggaatttgttggacttggagagctagaaatcctatttgtatcgctaaagaatcttgtccaatattt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39676233 |
tgccattggagattctagctccattttccttgctggaatttgttggacttggagagctagaaatcctatttgtatcgctaaagaatcttgtccaatattt |
39676134 |
T |
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| Q |
318 |
aaacttactttggttgttcattctctcaactcttaattagatgttgttacccacctca |
375 |
Q |
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| T |
39676133 |
aaacttactttggttgttcattctctcaactcttaattagatgttgttacccacctca |
39676076 |
T |
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