View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17795_high_27 (Length: 376)
Name: NF17795_high_27
Description: NF17795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17795_high_27 |
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Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 16 - 360
Target Start/End: Original strand, 48170378 - 48170722
Alignment:
| Q |
16 |
acagaacaacatctaccaaaaaacgaagatcaagcccataattatatttatgattcgtgaaattagcctcataaatgaagaagaaacagcaacgagttaa |
115 |
Q |
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| T |
48170378 |
acagaacaacatctaccaaaaaacgaagatcaagcccataattatatttatgattcgtgaaattagcctcataaatgaagaagaaacagcaatgagttaa |
48170477 |
T |
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| Q |
116 |
cnnnnnnnnttaactggagctcattgcagaagagtccagatggatattcacatcattaaaattacctccacagtgaaataatccttaagatacacgtctc |
215 |
Q |
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| T |
48170478 |
caaaaaaaattaactggagctcattgcagaagagtccagatggatattcacatcattaaaattacctccacagtgaaataatccttaagatacacgtctc |
48170577 |
T |
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| Q |
216 |
atgctacttatttcttcatatctttccagcaagttagagaagtgaacatgagaaaattacttgagccaatgatcttgcattagccttctttatagtgatg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48170578 |
atgctacttatttcttcatatctttccagcaagttagagaagtgaacatgagaaaattacttgagccaatgatcttgcattagccttctttatagtgatg |
48170677 |
T |
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| Q |
316 |
ctgctaaacaaacttatcatattggataaaataaaccgatataat |
360 |
Q |
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| T |
48170678 |
ctgctaaacaaacttatcatattggataaaataaaccgatataat |
48170722 |
T |
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