View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17795_high_28 (Length: 373)
Name: NF17795_high_28
Description: NF17795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17795_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 30901988 - 30902340
Alignment:
| Q |
1 |
ttgaaccagacacttctaacctcgcacttgtgtatttgctactttgtctagagacgaaataaaagttgaaaaattgtccaaaattataatctcttgagag |
100 |
Q |
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| T |
30901988 |
ttgaacgagacacttctaacctcgcacttgtgtatttgctactttgtctagagacgaaataaaagttgaaaaattgtccaaaattataatctcttgtgag |
30902087 |
T |
|
| Q |
101 |
aaaattggaagtgagaaatnnnnnnncaaatatctaaataaaactatatagtacattacattcacatatacaaactcatacaaaatattgcacaacaaat |
200 |
Q |
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| T |
30902088 |
aaaattggaagtgagaaataaaaaaacaaagatctaaataaaactatatagtacattacattca--tatacaaactcatacaaaatattgcacaacaaat |
30902185 |
T |
|
| Q |
201 |
tttaaggcaagaagccattataaacattgtgactatgcctatcaacactattaccattacaattagcattaacaacaacaacttctacattctcgccgcc |
300 |
Q |
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||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30902186 |
tttaaggcaagaagccattatgaacattgtgcctatgcctatcaacactattaccattacaattagcattaacaacaacaacttctacattctcgccgcc |
30902285 |
T |
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| Q |
301 |
ggcagttttctgttccgtttcaccggcaacttctccggcagccgtcggttgataa |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30902286 |
ggcagttttctgttccgtttcaccggcaacttctccggcagccgtcggttgataa |
30902340 |
T |
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