View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17795_high_3 (Length: 667)
Name: NF17795_high_3
Description: NF17795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17795_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-141; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 380 - 650
Target Start/End: Original strand, 12720744 - 12721014
Alignment:
| Q |
380 |
gataggatctcaatttttcacttcatattaagtgacccatctcttagaatagtgatagtgaacttggctacttaggggccacacatagcaagaacatgcc |
479 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
12720744 |
gatatgatctcaatttttcacttcatattaaatgacccatctcttagaatagtgatagtgaacttggcttcttaggggccacacatagcaagaacatgcc |
12720843 |
T |
|
| Q |
480 |
atgtgctaagtgacccatcttacatgtgaaagtttccatgctggatttggttgaactttcaatcgtatgctcacactgaacctggctttggaatgttgaa |
579 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12720844 |
atgtgctaagtgacccatcttacatgtgaaagtttccatgctggatttggttcaactttcaatcgtatgctcacactgaacctggctttggaatgttgaa |
12720943 |
T |
|
| Q |
580 |
gaacatgccggcaccttcaattttggataatgtatttgtatatattgatatctcttgttcttgccactttt |
650 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12720944 |
gaacatgccggcaccttcaattttggataatgtatttgtatatattgatatctcttgttcttgccactttt |
12721014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 380 - 650
Target Start/End: Original strand, 12781959 - 12782229
Alignment:
| Q |
380 |
gataggatctcaatttttcacttcatattaagtgacccatctcttagaatagtgatagtgaacttggctacttaggggccacacatagcaagaacatgcc |
479 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
12781959 |
gatatgatctcaatttttcacttcatattaaatgacccatctcttagaatagtgatagtgaacttggcttcttaggggccacacatagcaagaacatgcc |
12782058 |
T |
|
| Q |
480 |
atgtgctaagtgacccatcttacatgtgaaagtttccatgctggatttggttgaactttcaatcgtatgctcacactgaacctggctttggaatgttgaa |
579 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12782059 |
atgtgctaagtgacccatcttacatgtgaaagtttccatgctggatttggttcaactttcaatcgtatgctcacactgaacctggctttggaatgttgaa |
12782158 |
T |
|
| Q |
580 |
gaacatgccggcaccttcaattttggataatgtatttgtatatattgatatctcttgttcttgccactttt |
650 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12782159 |
gaacatgccggcaccttcaattttggataatgtatttgtatatattgatatctcttgttcttgccactttt |
12782229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 12781524 - 12781756
Alignment:
| Q |
16 |
aatatcatagtcactatcgtcacgttgtaaatttggcgataaaactcttatgattgtgtttgatttgtaccatacttgatctagaaactagtcatgatgt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12781524 |
aatatcatagtcactatcgtcacgttgtaaatttggagataaaactcttatgattgtgtttgatttgtaccatacttgatctagaaactagtcatgatgt |
12781623 |
T |
|
| Q |
116 |
cgga----------agttagagattgcacaaaagcatgaatttttatccctcattaaactatgcaacaactttttgtcnnnnnnntagattgtttgtttt |
205 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| || |||||||||||| |
|
|
| T |
12781624 |
cggacaatacatgtagttagagattgcacaaaagcatgaatttttatccctcattaaattatgcgacaactttttgtcaaaaaaataaattgtttgtttt |
12781723 |
T |
|
| Q |
206 |
gggaatcaaacacactctatatttttgtaaggc |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
12781724 |
gggaatcaaacacactctatatttttgtaaggc |
12781756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 12720309 - 12720539
Alignment:
| Q |
16 |
aatatcatagtcactatcgtcacgttgtaaatttggcgataaaactcttatgattgtgtttgatttgtaccatacttgatctagaaactagtcatgatgt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12720309 |
aatatcatagtcactatcgtcacgttgtaaatttggagataaaactcttatgattgtgtttgatttgtaccatacttgatctagaaactagtcatgatgt |
12720408 |
T |
|
| Q |
116 |
cgga----------agttagagattgcacaaaagcatgaatttttatccctcattaaactatgcaacaactttttgtcnnnnnnntagattgtttgtttt |
205 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||| ||| |
|
|
| T |
12720409 |
cggacaatacatgtagttagagattgcacaaaagcatgaatttttatccctcattaaaccatgcgacaactttttgtcaaaaaaatagattgtttggttt |
12720508 |
T |
|
| Q |
206 |
gggaatcaaacacactctatatttttgtaag |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
12720509 |
gggaatcaaacacactctatatttttgtaag |
12720539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 380 - 478
Target Start/End: Original strand, 12783708 - 12783806
Alignment:
| Q |
380 |
gataggatctcaatttttcacttcatattaagtgacccatctcttagaatagtgatagtgaacttggctacttaggggccacacatagcaagaacatgc |
478 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
12783708 |
gatatgatctcaatttttcacttcatattaaatgacccatctcttagaatagtgatagtgaacttggcttcttaggggccacacatagcaagaacatgc |
12783806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University