View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17795_high_36 (Length: 299)

Name: NF17795_high_36
Description: NF17795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17795_high_36
NF17795_high_36
[»] chr4 (15 HSPs)
chr4 (178-284)||(21360341-21360447)
chr4 (97-166)||(21361509-21361578)
chr4 (38-82)||(25573250-25573294)
chr4 (38-82)||(30779451-30779495)
chr4 (38-82)||(50562704-50562748)
chr4 (38-84)||(21098098-21098144)
chr4 (41-82)||(48076946-48076987)
chr4 (38-70)||(6385393-6385425)
chr4 (38-82)||(20581938-20581982)
chr4 (38-86)||(24687309-24687357)
chr4 (38-70)||(34986906-34986938)
chr4 (38-82)||(2847289-2847335)
chr4 (41-82)||(18924256-18924297)
chr4 (41-82)||(20581614-20581655)
chr4 (41-82)||(22180240-22180281)
[»] chr5 (10 HSPs)
chr5 (38-82)||(16667692-16667736)
chr5 (41-82)||(37857506-37857547)
chr5 (38-82)||(39055796-39055840)
chr5 (41-82)||(13363763-13363804)
chr5 (42-82)||(23334744-23334784)
chr5 (41-77)||(23948552-23948588)
chr5 (38-82)||(7183879-7183923)
chr5 (11-39)||(13362857-13362885)
chr5 (38-82)||(15912414-15912457)
chr5 (11-39)||(23335657-23335685)
[»] chr3 (9 HSPs)
chr3 (38-82)||(16276703-16276747)
chr3 (38-80)||(47729148-47729190)
chr3 (42-82)||(9639883-9639923)
chr3 (42-82)||(51681222-51681262)
chr3 (38-79)||(23700069-23700109)
chr3 (38-79)||(23718524-23718564)
chr3 (38-79)||(23736980-23737020)
chr3 (38-82)||(8719103-8719147)
chr3 (38-82)||(9070990-9071034)
[»] scaffold0460 (1 HSPs)
scaffold0460 (38-82)||(2298-2342)
[»] scaffold0012 (1 HSPs)
scaffold0012 (38-82)||(119880-119924)
[»] chr7 (10 HSPs)
chr7 (38-82)||(45402214-45402258)
chr7 (38-82)||(46025026-46025070)
chr7 (38-82)||(21405384-21405428)
chr7 (38-82)||(27334705-27334749)
chr7 (38-78)||(33798699-33798739)
chr7 (38-68)||(16932569-16932599)
chr7 (38-68)||(16937952-16937982)
chr7 (38-79)||(5758277-5758317)
chr7 (11-40)||(32090665-32090694)
chr7 (38-67)||(44140103-44140132)
[»] chr2 (6 HSPs)
chr2 (38-82)||(36635789-36635833)
chr2 (38-82)||(4280707-4280751)
chr2 (38-82)||(24023987-24024031)
chr2 (41-82)||(25996058-25996099)
chr2 (38-82)||(20710748-20710792)
chr2 (38-82)||(43823841-43823885)
[»] chr1 (4 HSPs)
chr1 (38-82)||(20481497-20481541)
chr1 (38-82)||(23319049-23319093)
chr1 (38-82)||(45890559-45890603)
chr1 (38-87)||(16117013-16117062)
[»] chr8 (6 HSPs)
chr8 (44-82)||(1672743-1672781)
chr8 (38-82)||(7614788-7614832)
chr8 (38-82)||(24472989-24473033)
chr8 (11-39)||(7614155-7614183)
chr8 (38-70)||(35448513-35448545)
chr8 (38-82)||(45409514-45409558)
[»] scaffold0717 (1 HSPs)
scaffold0717 (42-82)||(6538-6578)
[»] scaffold0009 (1 HSPs)
scaffold0009 (38-82)||(202946-202990)
[»] scaffold0006 (1 HSPs)
scaffold0006 (38-82)||(210004-210048)
[»] chr6 (3 HSPs)
chr6 (38-82)||(4101999-4102043)
chr6 (38-82)||(25119214-25119258)
chr6 (38-82)||(32557137-32557181)
[»] scaffold0097 (1 HSPs)
scaffold0097 (38-82)||(14587-14631)
[»] scaffold0074 (1 HSPs)
scaffold0074 (38-82)||(35797-35841)


Alignment Details
Target: chr4 (Bit Score: 103; Significance: 3e-51; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 178 - 284
Target Start/End: Complemental strand, 21360447 - 21360341
Alignment:
Q  178 tctatcaaactcatttcatttcaacatgaagttttgtgaagaaccattgtcaacaatgcaactgcaatctcattctctcctttcagattctgaatttgac 277  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21360447 tctatcaaactcatttcatttcaacatgaagttttatgaagaaccattgtcaacaatgcaactgcaatctcattctctcctttcagattctgaatttgac 21360348  T
Q  278 tacaaac 284  Q
    |||||||    
T  21360347 tacaaac 21360341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 97 - 166
Target Start/End: Complemental strand, 21361578 - 21361509
Alignment:
Q  97 ccaaccattgaaactcaaaaaatctttaaactcgtgaaccctcaaatctttaaacccagaaagccagaag 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  21361578 ccaaccattgaaactcaaaaaatctttaaactcgtgaaccctcaaatatttaaacccagaaggccagaag 21361509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 25573294 - 25573250
Alignment:
Q  38 aagcaattatgttgggctaccggttaatgggctaggatttatgca 82  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  25573294 aagcaattatgttgggctaccggttaatgggctgggatttatgca 25573250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 30779495 - 30779451
Alignment:
Q  38 aagcaattatgttgggctaccggttaatgggctaggatttatgca 82  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  30779495 aagcaattatgttgggctaccggttaatgggctgggatttatgca 30779451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 50562748 - 50562704
Alignment:
Q  38 aagcaattatgttgggctaccggttaatgggctaggatttatgca 82  Q
    |||||||||||||| |||||||||||||||||| |||||||||||    
T  50562748 aagcaattatgttgagctaccggttaatgggctgggatttatgca 50562704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 84
Target Start/End: Original strand, 21098098 - 21098144
Alignment:
Q  38 aagcaattatgttgggctaccggttaatgggctaggatttatgcatg 84  Q
    ||||||||||||||||||||| |||||||||||  ||||||||||||    
T  21098098 aagcaattatgttgggctaccagttaatgggctgtgatttatgcatg 21098144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 82
Target Start/End: Complemental strand, 48076987 - 48076946
Alignment:
Q  41 caattatgttgggctaccggttaatgggctaggatttatgca 82  Q
    |||||||||||| ||||||||||||||||| |||||||||||    
T  48076987 caattatgttggactaccggttaatgggctgggatttatgca 48076946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 70
Target Start/End: Complemental strand, 6385425 - 6385393
Alignment:
Q  38 aagcaattatgttgggctaccggttaatgggct 70  Q
    |||||||||||||||||||||||||||||||||    
T  6385425 aagcaattatgttgggctaccggttaatgggct 6385393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 20581982 - 20581938
Alignment:
Q  38 aagcaattatgttgggctaccggttaatgggctaggatttatgca 82  Q
    ||||||||||||||| ||||||||||||||| | |||||||||||    
T  20581982 aagcaattatgttggactaccggttaatgggttgggatttatgca 20581938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 24687309 - 24687357
Alignment:
Q  38 aagcaattatgttgggctaccggttaatgggctaggatttatgcatgat 86  Q
    ||||||||||| |||||||||||||||||||||  || |||||||||||    
T  24687309 aagcaattatgatgggctaccggttaatgggctgagacttatgcatgat 24687357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 70
Target Start/End: Original strand, 34986906 - 34986938
Alignment:
Q  38 aagcaattatgttgggctaccggttaatgggct 70  Q
    |||||||||||||||||||||||||||||||||    
T  34986906 aagcaattatgttgggctaccggttaatgggct 34986938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 2847335 - 2847289
Alignment:
Q  38 aagcaattatgttgggctaccggtt--aatgggctaggatttatgca 82  Q
    |||||||||||||||||||||||||  |||||||| |||||||||||    
T  2847335 aagcaattatgttgggctaccggttaaaatgggctgggatttatgca 2847289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 18924256 - 18924297
Alignment:
Q  41 caattatgttgggctaccggttaatgggctaggatttatgca 82  Q
    |||||||||||| ||||||||||||||||| | |||||||||    
T  18924256 caattatgttggactaccggttaatgggctggaatttatgca 18924297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 82
Target Start/End: Complemental strand, 20581655 - 20581614
Alignment:
Q  41 caattatgttgggctaccggttaatgggctaggatttatgca 82  Q
    |||||||||||| |||||||||||||||||  ||||||||||    
T  20581655 caattatgttggactaccggttaatgggctgagatttatgca 20581614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 82
Target Start/End: Complemental strand, 22180281 - 22180240
Alignment:
Q  41 caattatgttgggctaccggttaatgggctaggatttatgca 82  Q
    |||||||||||| |||||| |||||||||| |||||||||||    
T  22180281 caattatgttggcctaccgattaatgggctgggatttatgca 22180240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 16667736 - 16667692
Alignment:
Q  38 aagcaattatgttgggctaccggttaatgggctaggatttatgca 82  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  16667736 aagcaattatgttgggctaccggttaatgggctgggatttatgca 16667692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 37857506 - 37857547
Alignment:
Q  41 caattatgttgggctaccggttaatgggctaggatttatgca 82  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  37857506 caattatgttgggctaccggttaatgggctgggatttatgca 37857547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 39055840 - 39055796
Alignment:
Q  38 aagcaattatgttgggctaccggttaatgggctaggatttatgca 82  Q
    ||||||||||||||||||||||||||||||||  |||||||||||    
T  39055840 aagcaattatgttgggctaccggttaatgggcggggatttatgca 39055796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 13363763 - 13363804
Alignment:
Q  41 caattatgttgggctaccggttaatgggctaggatttatgca 82  Q
    ||||||||||||||||||||||||||| || |||||||||||    
T  13363763 caattatgttgggctaccggttaatggactgggatttatgca 13363804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 23334784 - 23334744
Alignment:
Q  42 aattatgttgggctaccggttaatgggctaggatttatgca 82  Q
    ||||||||||| ||||||||||||||||| |||||||||||    
T  23334784 aattatgttggactaccggttaatgggctgggatttatgca 23334744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 23948552 - 23948588
Alignment:
Q  41 caattatgttgggctaccggttaatgggctaggattt 77  Q
    |||||||||||||||||||||||||||||| ||||||    
T  23948552 caattatgttgggctaccggttaatgggctgggattt 23948588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 7183879 - 7183923
Alignment:
Q  38 aagcaattatgttgggctaccggttaatgggctaggatttatgca 82  Q
    ||||||||||||| ||||||| |||||||||||  ||||||||||    
T  7183879 aagcaattatgttaggctacctgttaatgggctgagatttatgca 7183923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 39
Target Start/End: Original strand, 13362857 - 13362885
Alignment:
Q  11 cataggcttctcaaactacaccaaatcaa 39  Q
    |||||||||||||||||||||||||||||    
T  13362857 cataggcttctcaaactacaccaaatcaa 13362885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 15912457 - 15912414
Alignment:
Q  38 aagcaattatgttgggctaccggttaatgggctaggatttatgca 82  Q
    ||||||||||||||| ||| ||||||||||||| |||||||||||    
T  15912457 aagcaattatgttgg-ctatcggttaatgggctgggatttatgca 15912414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 39
Target Start/End: Complemental strand, 23335685 - 23335657
Alignment:
Q  11 cataggcttctcaaactacaccaaatcaa 39  Q
    |||||||||||||||||||||||||||||    
T  23335685 cataggcttctcaaactacaccaaatcaa 23335657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 16276747 - 16276703
Alignment:
Q  38 aagcaattatgttgggctaccggttaatgggctaggatttatgca 82  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  16276747 aagcaattatgttgggctaccggttaatgggcttggatttatgca 16276703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 80
Target Start/End: Original strand, 47729148 - 47729190
Alignment:
Q  38 aagcaattatgttgggctaccggttaatgggctaggatttatg 80  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  47729148 aagcaattatgttgggctaccggttaatgggctgggatttatg 47729190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 9639923 - 9639883
Alignment:
Q  42 aattatgttgggctaccggttaatgggctaggatttatgca 82  Q
    |||||||||| |||||||||||||||||| |||||||||||    
T  9639923 aattatgttgagctaccggttaatgggctgggatttatgca 9639883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 51681262 - 51681222
Alignment:
Q  42 aattatgttgggctaccggttaatgggctaggatttatgca 82  Q
    |||||||||||||||||||||||||||||  ||||||||||    
T  51681262 aattatgttgggctaccggttaatgggctgtgatttatgca 51681222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 79
Target Start/End: Original strand, 23700069 - 23700109
Alignment:
Q  38 aagcaattatgttgggctaccggttaatgggctaggatttat 79  Q
    ||||||||||||||||||| ||||||||||||| ||||||||    
T  23700069 aagcaattatgttgggcta-cggttaatgggctgggatttat 23700109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 79
Target Start/End: Original strand, 23718524 - 23718564
Alignment:
Q  38 aagcaattatgttgggctaccggttaatgggctaggatttat 79  Q
    ||||||||||||||||||| ||||||||||||| ||||||||    
T  23718524 aagcaattatgttgggcta-cggttaatgggctgggatttat 23718564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 79
Target Start/End: Original strand, 23736980 - 23737020
Alignment:
Q  38 aagcaattatgttgggctaccggttaatgggctaggatttat 79  Q
    ||||||||||||||||||| ||||||||||||| ||||||||    
T  23736980 aagcaattatgttgggcta-cggttaatgggctgggatttat 23737020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 8719103 - 8719147
Alignment:
Q  38 aagcaattatgttgggctaccggttaatgggctaggatttatgca 82  Q
    ||||||||||| |||||||||||| |||||| | |||||||||||    
T  8719103 aagcaattatgctgggctaccggtcaatgggttgggatttatgca 8719147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 9070990 - 9071034
Alignment:
Q  38 aagcaattatgttgggctaccggttaatgggctaggatttatgca 82  Q
    ||||||||||| |||||||||||| |||||| | |||||||||||    
T  9070990 aagcaattatgctgggctaccggtcaatgggttgggatttatgca 9071034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0460 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 2298 - 2342
Alignment:
Q  38 aagcaattatgttgggctaccggttaatgggctaggatttatgca 82  Q
    ||||||||||||||||||||||||||||||| | |||||||||||    
T  2298 aagcaattatgttgggctaccggttaatgggttgggatttatgca 2342  T

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Target: scaffold0012 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 119880 - 119924
Alignment:
Q  38 aagcaattatgttgggctaccggttaatgggctaggatttatgca 82  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||    
T  119880 aagcaattatgttgggctaccagttaatgggctgggatttatgca 119924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 45402258 - 45402214
Alignment:
Q  38 aagcaattatgttgggctaccggttaatgggctaggatttatgca 82  Q
    ||||||||||||||||||||||||||||||| | |||||||||||    
T  45402258 aagcaattatgttgggctaccggttaatgggttgggatttatgca 45402214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 46025026 - 46025070
Alignment:
Q  38 aagcaattatgttgggctaccggttaatgggctaggatttatgca 82  Q
    ||||||||||||||||||||||||||||| | |||||||||||||    
T  46025026 aagcaattatgttgggctaccggttaatgagttaggatttatgca 46025070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 21405428 - 21405384
Alignment:
Q  38 aagcaattatgttgggctaccggttaatgggctaggatttatgca 82  Q
    |||||||||||||||||||||||||||||| ||  ||||||||||    
T  21405428 aagcaattatgttgggctaccggttaatggactgtgatttatgca 21405384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 27334749 - 27334705
Alignment:
Q  38 aagcaattatgttgggctaccggttaatgggctaggatttatgca 82  Q
    |||||||||||||||||||||| |||||||||| ||| |||||||    
T  27334749 aagcaattatgttgggctaccgattaatgggctgggacttatgca 27334705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 33798699 - 33798739
Alignment:
Q  38 aagcaattatgttgggctaccggttaatgggctaggattta 78  Q
    ||||||||||||||||||| ||||||||||||| |||||||    
T  33798699 aagcaattatgttgggctatcggttaatgggcttggattta 33798739  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 68
Target Start/End: Original strand, 16932569 - 16932599
Alignment:
Q  38 aagcaattatgttgggctaccggttaatggg 68  Q
    |||||||||||||||||||||||||||||||    
T  16932569 aagcaattatgttgggctaccggttaatggg 16932599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 68
Target Start/End: Original strand, 16937952 - 16937982
Alignment:
Q  38 aagcaattatgttgggctaccggttaatggg 68  Q
    |||||||||||||||||||||||||||||||    
T  16937952 aagcaattatgttgggctaccggttaatggg 16937982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 79
Target Start/End: Original strand, 5758277 - 5758317
Alignment:
Q  38 aagcaattatgttgggctaccggttaatgggctaggatttat 79  Q
    ||||||||||||||||||| ||||||||||||| ||||||||    
T  5758277 aagcaattatgttgggcta-cggttaatgggctgggatttat 5758317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 40
Target Start/End: Original strand, 32090665 - 32090694
Alignment:
Q  11 cataggcttctcaaactacaccaaatcaag 40  Q
    ||||||||||||||||||||||||||||||    
T  32090665 cataggcttctcaaactacaccaaatcaag 32090694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 67
Target Start/End: Complemental strand, 44140132 - 44140103
Alignment:
Q  38 aagcaattatgttgggctaccggttaatgg 67  Q
    ||||||||||||||||||||||||||||||    
T  44140132 aagcaattatgttgggctaccggttaatgg 44140103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 36635833 - 36635789
Alignment:
Q  38 aagcaattatgttgggctaccggttaatgggctaggatttatgca 82  Q
    |||||||||||||||||||||||||||||||||  ||||||||||    
T  36635833 aagcaattatgttgggctaccggttaatgggctgagatttatgca 36635789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 4280751 - 4280707
Alignment:
Q  38 aagcaattatgttgggctaccggttaatgggctaggatttatgca 82  Q
    |||||||||||||||||||||| |||||| ||||| |||||||||    
T  4280751 aagcaattatgttgggctaccgattaatgagctagaatttatgca 4280707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 24024031 - 24023987
Alignment:
Q  38 aagcaattatgttgggctaccggttaatgggctaggatttatgca 82  Q
    ||||||||||||||||||||| |||||||||||  ||||||||||    
T  24024031 aagcaattatgttgggctaccagttaatgggctgtgatttatgca 24023987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 25996058 - 25996099
Alignment:
Q  41 caattatgttgggctaccggttaatgggctaggatttatgca 82  Q
    |||||||||||||||||||||||||||| | | |||||||||    
T  25996058 caattatgttgggctaccggttaatgggttggaatttatgca 25996099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 20710748 - 20710792
Alignment:
Q  38 aagcaattatgttgggctaccggttaatgggctaggatttatgca 82  Q
    ||||||||||||||  |||||||||||||||||  ||||||||||    
T  20710748 aagcaattatgttgaactaccggttaatgggctgagatttatgca 20710792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 43823841 - 43823885
Alignment:
Q  38 aagcaattatgttgggctaccggttaatgggctaggatttatgca 82  Q
    |||||||| |||||| ||||||| ||||||||| |||||||||||    
T  43823841 aagcaattgtgttggactaccggataatgggctgggatttatgca 43823885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 20481497 - 20481541
Alignment:
Q  38 aagcaattatgttgggctaccggttaatgggctaggatttatgca 82  Q
    ||||||||||||||||||||||||||||||| | |||||||||||    
T  20481497 aagcaattatgttgggctaccggttaatgggttgggatttatgca 20481541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 23319093 - 23319049
Alignment:
Q  38 aagcaattatgttgggctaccggttaatgggctaggatttatgca 82  Q
    |||||||||||||||||||||||||||||||||  ||||||||||    
T  23319093 aagcaattatgttgggctaccggttaatgggctgagatttatgca 23319049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 45890559 - 45890603
Alignment:
Q  38 aagcaattatgttgggctaccggttaatgggctaggatttatgca 82  Q
    ||||||||||||||||||||||||||||||||| | |||||||||    
T  45890559 aagcaattatgttgggctaccggttaatgggctggaatttatgca 45890603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 16117013 - 16117062
Alignment:
Q  38 aagcaattatgttgggctaccggttaatgggctaggatttatgcatgata 87  Q
    ||||||||||||||| ||||||||||||||||  ||||||||||| ||||    
T  16117013 aagcaattatgttggactaccggttaatgggcagggatttatgcacgata 16117062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 1672743 - 1672781
Alignment:
Q  44 ttatgttgggctaccggttaatgggctaggatttatgca 82  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  1672743 ttatgttgggctaccggttaatgggctgggatttatgca 1672781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 7614788 - 7614832
Alignment:
Q  38 aagcaattatgttgggctaccggttaatgggctaggatttatgca 82  Q
    |||||||||| |||||||||||||||||||| | |||||||||||    
T  7614788 aagcaattatattgggctaccggttaatgggtttggatttatgca 7614832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 24473033 - 24472989
Alignment:
Q  38 aagcaattatgttgggctaccggttaatgggctaggatttatgca 82  Q
    ||||||||||||||| |||||||||||||||||  ||||||||||    
T  24473033 aagcaattatgttggactaccggttaatgggctgagatttatgca 24472989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 39
Target Start/End: Original strand, 7614155 - 7614183
Alignment:
Q  11 cataggcttctcaaactacaccaaatcaa 39  Q
    |||||||||||||||||||||||||||||    
T  7614155 cataggcttctcaaactacaccaaatcaa 7614183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 70
Target Start/End: Original strand, 35448513 - 35448545
Alignment:
Q  38 aagcaattatgttgggctaccggttaatgggct 70  Q
    ||||||||| |||||||||||||||||||||||    
T  35448513 aagcaattaagttgggctaccggttaatgggct 35448545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 45409558 - 45409514
Alignment:
Q  38 aagcaattatgttgggctaccggttaatgggctaggatttatgca 82  Q
    |||||||||||||| |||||| |||||||| || |||||||||||    
T  45409558 aagcaattatgttgcgctaccagttaatggactgggatttatgca 45409514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0717 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 6578 - 6538
Alignment:
Q  42 aattatgttgggctaccggttaatgggctaggatttatgca 82  Q
    ||||||||||| ||||||||||||||||| |||||||||||    
T  6578 aattatgttggactaccggttaatgggctgggatttatgca 6538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 202990 - 202946
Alignment:
Q  38 aagcaattatgttgggctaccggttaatgggctaggatttatgca 82  Q
    |||||||||||||||||||||||||||||| || |||||| ||||    
T  202990 aagcaattatgttgggctaccggttaatggactgggatttgtgca 202946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 210004 - 210048
Alignment:
Q  38 aagcaattatgttgggctaccggttaatgggctaggatttatgca 82  Q
    ||||||||||||||||| ||||||||||||| | |||||||||||    
T  210004 aagcaattatgttgggcaaccggttaatgggttgggatttatgca 210048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 4102043 - 4101999
Alignment:
Q  38 aagcaattatgttgggctaccggttaatgggctaggatttatgca 82  Q
    ||||||||||||||| |||||| |||||||||| |||||||||||    
T  4102043 aagcaattatgttggactaccgattaatgggctgggatttatgca 4101999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 25119258 - 25119214
Alignment:
Q  38 aagcaattatgttgggctaccggttaatgggctaggatttatgca 82  Q
    |||||||||||||| ||||||||||||||||||  ||||||||||    
T  25119258 aagcaattatgttgagctaccggttaatgggctgagatttatgca 25119214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 32557137 - 32557181
Alignment:
Q  38 aagcaattatgttgggctaccggttaatgggctaggatttatgca 82  Q
    |||||||||||||||||||||||||||||| ||  ||||||||||    
T  32557137 aagcaattatgttgggctaccggttaatggactgagatttatgca 32557181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 14587 - 14631
Alignment:
Q  38 aagcaattatgttgggctaccggttaatgggctaggatttatgca 82  Q
    ||||||||||||||  |||||||||||||||||  ||||||||||    
T  14587 aagcaattatgttgaactaccggttaatgggctgagatttatgca 14631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 35841 - 35797
Alignment:
Q  38 aagcaattatgttgggctaccggttaatgggctaggatttatgca 82  Q
    ||||||||||||||||||||| ||||||| |||  ||||||||||    
T  35841 aagcaattatgttgggctaccagttaatgagctgagatttatgca 35797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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