View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17795_high_4 (Length: 606)
Name: NF17795_high_4
Description: NF17795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17795_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 558; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 9 - 590
Target Start/End: Original strand, 37957322 - 37957903
Alignment:
| Q |
9 |
catcatcactcaacttgaacgcactgaaaatttcatcatggggaagctcttcgagcttttgcaaatgactttcccatgcttcctcttttctgccctgaag |
108 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37957322 |
catcataactcaacttgaacgcactgaaaatttcatcatgggaaagcttttcgagcttttgcaaatgactttcccatgcttcctcttttctgccctgaag |
37957421 |
T |
|
| Q |
109 |
aaatttgcccaaaactttaagcgctaccggaaccccgttagcataatctaataccttttttgataaactcacataaggttctattggatggttttgttta |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37957422 |
aaatttgcccaaaactttaagcgctaccggaaccccgttagcataatctaataccttttttgataaactcacataaggttctattggatggttttgttta |
37957521 |
T |
|
| Q |
209 |
aaagcaaatgaacagaagagttttagagaatcttgagaacccatctcatttactttatatatttcatcagcattgccattcttgagcacttgcttgtctc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37957522 |
aaagcaaatgaacagaagagttttagagaatcttgagaacccatctcatttactttatatatttcatcagcattgccattcttgagcacttgcttgtctc |
37957621 |
T |
|
| Q |
309 |
tgttagtcacaatgattatactcccttggccaaagttactatgatgtgttccaattaaatcttcaagttgatcagaatctttcacatcatcaagaacaag |
408 |
Q |
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|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37957622 |
tgttagtcacaatggttctactcccttggccaaagttactatgatgtgttccaattaaatcttcaagttgatcagaatctttcacatcatcaagaacaag |
37957721 |
T |
|
| Q |
409 |
gagaatctttgtccgtttgagccttggatcaaatgaaaaattggatttagaggatgtaatgtcttcatctagaagttctgataagtattttcttcgtaca |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37957722 |
gagaatctttgtccgtttgagccttggatcaaatgaaaaattggatttagaggatgtaatgtcttcatctagaagttctgataagtattttcttcgtaca |
37957821 |
T |
|
| Q |
509 |
tggtctagtccagctctttctatttcttgtttcacatttagaacgatgcttctggaactgaactgagttgcgagtttatgat |
590 |
Q |
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| T |
37957822 |
tggtctagtccagctctttcgatttcttgtttcacatttagaacgatgcttctggaactgaactgagttgcgagtttatgat |
37957903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 50 - 578
Target Start/End: Complemental strand, 37930220 - 37929696
Alignment:
| Q |
50 |
ggaagctcttcgagcttttgcaaatgactttcccatgcttcctcttttctgccctgaagaaatttgcccaaaactttaagcgctaccggaaccccgttag |
149 |
Q |
| |
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||||||| ||||||||||||||| | |||||||||||||| || | ||||||| |||| ||| ||||||||||| || |||| ||||| || |||| |
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| T |
37930220 |
ggaagcttttcgagcttttgcaactcactttcccatgctttctttgttctgccaagaagcaataatcccaaaactttgagagctaatggaactcctttag |
37930121 |
T |
|
| Q |
150 |
cataatctaataccttttttgataaactcacataaggttctattggatggttttgtttaaaagcaaatgaacagaagagttttagagaatcttgagaacc |
249 |
Q |
| |
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| T |
37930120 |
cataatttaataccttttctgataagctcacataagtttatattggatagttttgtttaaaagcacttaaacagaagagttgtagagaatcttgaaaatc |
37930021 |
T |
|
| Q |
250 |
catctcatttactttatatatttcatcagcattgccattcttgagcacttgcttgtctctgttagtcacaatgattatactcccttggcc--aaagttac |
347 |
Q |
| |
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|||||| | |||| |||||||||||| |||||| |||||| ||||||||||||||||| || ||||||||||| ||||||| |||| |||| ||| |
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| T |
37930020 |
catctccctaacttcatatatttcatcggcattggcattctcaagcacttgcttgtctctactactcacaatgattctactcccaaggccaaaaaggtac |
37929921 |
T |
|
| Q |
348 |
tatgatgtgttccaattaaatcttcaagttgatcagaatctttcacatcatcaagaacaaggagaatctttgtccgtttgagccttggatcaaatgaaaa |
447 |
Q |
| |
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|| || ||||||||| ||||||||||||| ||||| ||||| ||||||||||||||||||| |||| |||| ||||||||| ||||||| |
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| T |
37929920 |
tacga------ccaattaaaccttcaagttgatctgaatcgttcacgtcatcaagaacaaggagaacctttcctcgttgaagccttggaatgtatgaaaa |
37929827 |
T |
|
| Q |
448 |
attggatttagaggatgtaatgtcttcatctagaagttctgataagtattttcttcgtacatggtctagtccagctctttctatttcttgtttcacattt |
547 |
Q |
| |
|
||| || |||||||||||||||||| |||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| |
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|
| T |
37929826 |
cttgaatccagaggatgtaatgtcttcctctagaagttgtgataagtattttctttgtacatggcgtagtccagctctttctatttcttgttgagcattt |
37929727 |
T |
|
| Q |
548 |
agaacgatgcttctggaactgaactgagttg |
578 |
Q |
| |
|
|||| ||||||| |||||||||||||||||| |
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| T |
37929726 |
agaatgatgcttttggaactgaactgagttg |
37929696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 201 - 446
Target Start/End: Original strand, 44644330 - 44644572
Alignment:
| Q |
201 |
tttgtttaaaagcaaatgaacagaagagttttagagaatcttgagaacccatctcatttactttatatatttcatcagcattgccattcttgagcacttg |
300 |
Q |
| |
|
|||||||||| ||| | ||||||||||| |||||| || ||| || |||||| || |||| ||||||| ||||||| ||| ||||||| || || || |
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| T |
44644330 |
tttgtttaaaggcatttaaacagaagagtcgtagagattcatgaaaattcatctccttgacttcatatattccatcagctttgacattcttcagtacctg |
44644429 |
T |
|
| Q |
301 |
cttgtctctgttagtcacaatgattatactcccttggccaaagttactatgatgtgttccaattaaatcttcaagttgatcagaatctttcacatcatca |
400 |
Q |
| |
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| |||||||| |||||||||||||| |||| ||| | |||| |||||| | | |||||||||||||| ||||||||| |||| || ||||||||| |
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| T |
44644430 |
catgtctctgctagtcacaatgattctactacctggtgcaaacttactaagct---ttccaattaaatctctaagttgatccgaattgttaacatcatca |
44644526 |
T |
|
| Q |
401 |
agaacaaggagaatctttgtccgtttgagccttggatcaaatgaaa |
446 |
Q |
| |
|
|||||||||||| ||| |||| |||||||||| |||||||||||| |
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|
| T |
44644527 |
agaacaaggagagccttagtccatttgagcctttgatcaaatgaaa |
44644572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 179 - 346
Target Start/End: Complemental strand, 25721671 - 25721504
Alignment:
| Q |
179 |
acataaggttctattggatggttttgtttaaaagcaaatgaacagaagagttttagagaatcttgagaacccatctcatttactttatatatttcatcag |
278 |
Q |
| |
|
||||||| || ||| |||| |||||||||||| ||| | ||| |||||||| || ||||||||| ||| |||||| || |||| ||||||||||| | |
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| T |
25721671 |
acataagcttttataggatagttttgtttaaaggcatttaaactgaagagttgtactgaatcttgaaaacacatctccttgacttcgtatatttcatctg |
25721572 |
T |
|
| Q |
279 |
cattgccattcttgagcacttgcttgtctctgttagtcacaatgattatactcccttggccaaagtta |
346 |
Q |
| |
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| || ||||||| ||||| || |||||||| |||||| ||||||| |||| || |||||||||||| |
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|
| T |
25721571 |
aaatggcattcttaagcacatgtttgtctctactagtcataatgattctactaccctggccaaagtta |
25721504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 227 - 330
Target Start/End: Complemental strand, 19869328 - 19869225
Alignment:
| Q |
227 |
agttttagagaatcttgagaacccatctcatttactttatatatttcatcagcattgccattcttgagcacttgcttgtctctgttagtcacaatgatta |
326 |
Q |
| |
|
|||| ||||||||||||| || ||||||||| |||| ||||||||||||||||| |||||| || |||||| ||||||| |||||||||||||| |
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|
| T |
19869328 |
agttgtagagaatcttgaaaattcatctcattcacttcatatatttcatcagcatctatattcttaagtacttgcatgtctctactagtcacaatgattc |
19869229 |
T |
|
| Q |
327 |
tact |
330 |
Q |
| |
|
|||| |
|
|
| T |
19869228 |
tact |
19869225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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