View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17795_high_43 (Length: 288)

Name: NF17795_high_43
Description: NF17795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17795_high_43
NF17795_high_43
[»] chr3 (11 HSPs)
chr3 (22-267)||(3705238-3705494)
chr3 (24-178)||(3712892-3713042)
chr3 (23-178)||(3701595-3701743)
chr3 (22-153)||(3719434-3719563)
chr3 (21-103)||(3707922-3708004)
chr3 (22-96)||(26807448-26807522)
chr3 (22-96)||(32775270-32775344)
chr3 (22-96)||(32814956-32815030)
chr3 (23-96)||(32772691-32772764)
chr3 (23-104)||(3716404-3716479)
chr3 (34-87)||(41845773-41845826)
[»] chr8 (8 HSPs)
chr8 (23-108)||(12483098-12483183)
chr8 (22-95)||(12289395-12289468)
chr8 (23-96)||(12670511-12670584)
chr8 (24-96)||(939435-939507)
chr8 (24-96)||(2105864-2105936)
chr8 (23-103)||(12482778-12482858)
chr8 (23-96)||(11949429-11949502)
chr8 (21-61)||(11949183-11949223)
[»] chr7 (2 HSPs)
chr7 (21-96)||(25796172-25796247)
chr7 (34-87)||(45343081-45343134)
[»] chr4 (4 HSPs)
chr4 (21-96)||(19185991-19186066)
chr4 (24-96)||(26741372-26741444)
chr4 (24-95)||(30161835-30161906)
chr4 (24-95)||(51386264-51386335)
[»] chr1 (5 HSPs)
chr1 (22-96)||(43849046-43849120)
chr1 (24-101)||(27981044-27981121)
chr1 (23-95)||(30953117-30953189)
chr1 (34-87)||(39755137-39755190)
chr1 (34-87)||(39760491-39760544)
[»] chr5 (4 HSPs)
chr5 (23-96)||(31965398-31965471)
chr5 (24-96)||(8219734-8219806)
chr5 (24-96)||(38322601-38322673)
chr5 (24-96)||(38327773-38327845)
[»] chr6 (1 HSPs)
chr6 (24-96)||(21882907-21882979)
[»] chr2 (4 HSPs)
chr2 (24-96)||(4767493-4767565)
chr2 (24-96)||(38551328-38551400)
chr2 (34-87)||(14428572-14428625)
chr2 (34-87)||(34962092-34962145)


Alignment Details
Target: chr3 (Bit Score: 170; Significance: 3e-91; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 22 - 267
Target Start/End: Complemental strand, 3705494 - 3705238
Alignment:
Q  22 attgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgcttagttgttcaattgatgataatgtta 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  3705494 attgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttgttattcaattgatgataatgtta 3705395  T
Q  122 ttagatatttattatctacagactacaatgattgataatatgacagaggaaacttctaa-----------tccaaatttcttgatgtcaaaattgaagga 210  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||| ||||    
T  3705394 ttacatatttattatctacagactacaatgattgataatatgacagaggaaacttctaaaatcttaattgtccaaatttcttgatgtcaaaattggagga 3705295  T
Q  211 atgnnnnnnngtcccaaataacaattgattttttgattgtacattttattcacttta 267  Q
    |||       ||||||||||||  |||||||||||||||||||||||| ||||||||    
T  3705294 atgtttttttgtcccaaataactcttgattttttgattgtacattttactcacttta 3705238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 24 - 178
Target Start/End: Complemental strand, 3713042 - 3712892
Alignment:
Q  24 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgcttagttgttcaattgatgataatgttatt 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  3713042 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttgttgttcatttgatgataatgttatt 3712943  T
Q  124 agatatttattatctacagactacaatgattgataatatgacagaggaaacttct 178  Q
    |||||||||  ||||| |||||||||    ||||||||||||| |||||||||||    
T  3712942 agatatttaacatctatagactacaa----tgataatatgacaaaggaaacttct 3712892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 23 - 178
Target Start/End: Complemental strand, 3701743 - 3701595
Alignment:
Q  23 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgcttagttgttcaattgatgataatgttat 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||   | | |||||| |    
T  3701743 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttgttgttctat---tcaaaatgttgt 3701647  T
Q  123 tagatatttattatctacagactacaatgattgataatatgacagaggaaacttct 178  Q
    ||||||||||  ||||| | |||| ||    ||||||||||||| |||||||||||    
T  3701646 tagatatttaacatctagatactataa----tgataatatgacaaaggaaacttct 3701595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 22 - 153
Target Start/End: Complemental strand, 3719563 - 3719434
Alignment:
Q  22 attgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgcttagttgttcaattgatgataatgtta 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||  ||| ||| |||    
T  3719563 attgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttgttgtacattt--tgacaatatta 3719466  T
Q  122 ttagatatttattatctacagactacaatgat 153  Q
    |||||| ||||  ||||| || ||||||||||    
T  3719465 ttagatctttaacatctagagcctacaatgat 3719434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 21 - 103
Target Start/End: Complemental strand, 3708004 - 3707922
Alignment:
Q  21 tattgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgcttagttgtt 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3708004 tattgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttgttgtt 3707922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 26807448 - 26807522
Alignment:
Q  22 attgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26807448 attgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 26807522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 32775344 - 32775270
Alignment:
Q  22 attgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32775344 attgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 32775270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 32815030 - 32814956
Alignment:
Q  22 attgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32815030 attgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 32814956  T

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Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 23 - 96
Target Start/End: Complemental strand, 32772764 - 32772691
Alignment:
Q  23 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 96  Q
    ||||| ||||| |||||| |||||  ||||||||||||||||||||||||||||||| || |||||| ||||||    
T  32772764 ttgcagcagccaggaatcaaacccaagtctgtaccgtggcagggtactattctaccattaaaccacttgtgctt 32772691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 3716479 - 3716404
Alignment:
Q  23 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgcttagttgttc 104  Q
    |||||||||| ||||||||||||||| |||| ||||      ||||||||||||||||||||||| | ||||||| ||||||    
T  3716479 ttgcaccagctgggaatcgaacccggatctgaaccg------ggtactattctaccactagaccattcgtgcttaattgttc 3716404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 41845773 - 41845826
Alignment:
Q  34 gggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagacca 87  Q
    ||||||||||||| |||| ||||||||| ||||||||||  |||||||| ||||    
T  41845773 gggaatcgaaccctggtcagtaccgtgggagggtactatgataccactacacca 41845826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 108
Target Start/End: Original strand, 12483098 - 12483183
Alignment:
Q  23 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgcttagttgttcaatt 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  12483098 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttgttggtcaatt 12483183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 12289468 - 12289395
Alignment:
Q  22 attgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12289468 attgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 12289395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 12670511 - 12670584
Alignment:
Q  23 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12670511 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 12670584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 939435 - 939507
Alignment:
Q  24 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  939435 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 939507  T

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Target: chr8; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 2105936 - 2105864
Alignment:
Q  24 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2105936 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 2105864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 12482778 - 12482858
Alignment:
Q  23 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgcttagttgtt 103  Q
    ||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  12482778 ttgcaccagccaggaattgaacccgggtctgtaccatggcagggtactattctaccactagaccactggtgctttgttgtt 12482858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 11949429 - 11949502
Alignment:
Q  23 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 96  Q
    ||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  11949429 ttgcaccagccaggaattgaacccgggtctgtagcgtggcagggtactattctaccactagaccactggtgctt 11949502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 11949183 - 11949223
Alignment:
Q  21 tattgcaccagccgggaatcgaacccgggtctgtaccgtgg 61  Q
    ||||||||||||||||||| ||||||||||||| |||||||    
T  11949183 tattgcaccagccgggaattgaacccgggtctgaaccgtgg 11949223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 25796247 - 25796172
Alignment:
Q  21 tattgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25796247 tattgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 25796172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 45343081 - 45343134
Alignment:
Q  34 gggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagacca 87  Q
    ||||||||||||| |||| ||||||||| ||||||||||  |||||||| ||||    
T  45343081 gggaatcgaaccctggtcagtaccgtgggagggtactatgataccactacacca 45343134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 19186066 - 19185991
Alignment:
Q  21 tattgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19186066 tattgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 19185991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 26741372 - 26741444
Alignment:
Q  24 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26741372 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 26741444  T

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Target: chr4; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 24 - 95
Target Start/End: Complemental strand, 30161906 - 30161835
Alignment:
Q  24 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30161906 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 30161835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 24 - 95
Target Start/End: Original strand, 51386264 - 51386335
Alignment:
Q  24 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51386264 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 51386335  T

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Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 43849046 - 43849120
Alignment:
Q  22 attgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43849046 attgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 43849120  T

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Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 27981121 - 27981044
Alignment:
Q  24 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgcttagttg 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  27981121 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttgttg 27981044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 30953117 - 30953189
Alignment:
Q  23 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30953117 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 30953189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 39755190 - 39755137
Alignment:
Q  34 gggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagacca 87  Q
    ||||||||||||| |||| ||||||||| ||||||||||  |||||||| ||||    
T  39755190 gggaatcgaaccctggtcagtaccgtgggagggtactatgataccactacacca 39755137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 39760544 - 39760491
Alignment:
Q  34 gggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagacca 87  Q
    ||||||||||||| |||| ||||||||| ||||||||||  |||||||| ||||    
T  39760544 gggaatcgaaccctggtcagtaccgtgggagggtactatgataccactacacca 39760491  T

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Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 31965398 - 31965471
Alignment:
Q  23 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31965398 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 31965471  T

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Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 8219806 - 8219734
Alignment:
Q  24 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8219806 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 8219734  T

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Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 38322673 - 38322601
Alignment:
Q  24 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38322673 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 38322601  T

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Target: chr5; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 38327845 - 38327773
Alignment:
Q  24 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38327845 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 38327773  T

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Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 21882979 - 21882907
Alignment:
Q  24 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21882979 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 21882907  T

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Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 4767493 - 4767565
Alignment:
Q  24 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4767493 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 4767565  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 38551400 - 38551328
Alignment:
Q  24 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38551400 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 38551328  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 14428625 - 14428572
Alignment:
Q  34 gggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagacca 87  Q
    ||||||||||||| |||| ||||||||| ||||||||||  |||||||| ||||    
T  14428625 gggaatcgaaccctggtcagtaccgtgggagggtactatgataccactacacca 14428572  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 34962145 - 34962092
Alignment:
Q  34 gggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagacca 87  Q
    ||||||||||||| |||| ||||||||| ||||||||||  |||||||| ||||    
T  34962145 gggaatcgaaccctggtcagtaccgtgggagggtactatgataccactacacca 34962092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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