View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17795_high_44 (Length: 287)
Name: NF17795_high_44
Description: NF17795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17795_high_44 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 17 - 265
Target Start/End: Complemental strand, 30901661 - 30901413
Alignment:
| Q |
17 |
aagtatgtcaggtagaactttcaataatattcatttttaaaataggagataaataaaaatggcagcgcaatatactcacctgtccatatttgttccatcc |
116 |
Q |
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| T |
30901661 |
aagtatgtcaggtagaactttcaataatattcatttttaaaataggagataaataaaaatggcagcgcaatatactcacctgtccatatttgttccatcc |
30901562 |
T |
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| Q |
117 |
ccagctaaagacttttccattatcttgaagaaacaaaaacaaaaggaaaaccagtgataatcaattaatgatagggcatgcaagtaacagatgttttata |
216 |
Q |
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| T |
30901561 |
ccagctaaagacttttccattatcttgaagaaacaaaaacaaaaggaaaaccagtgataatcaattaatgatagggcatgcaagtaacagatgttttata |
30901462 |
T |
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| Q |
217 |
tttccaatgtaatcaacaagatacaaaattgattagttaatgacatata |
265 |
Q |
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| T |
30901461 |
tttccaatgtaatcaacaagatacaaaattgattagttaatgacatata |
30901413 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 287
Target Start/End: Complemental strand, 42793600 - 42793572
Alignment:
| Q |
259 |
acatatactccctccattccttttctttt |
287 |
Q |
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| T |
42793600 |
acatatactccctccattccttttctttt |
42793572 |
T |
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