View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17795_high_48 (Length: 268)
Name: NF17795_high_48
Description: NF17795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17795_high_48 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 258
Target Start/End: Original strand, 34706265 - 34706506
Alignment:
| Q |
17 |
actaagctcaatgtagcgtgtaaccgttttaaggtttctgaattgcgataacttctgatattgacattgtttatttcagtgtcaatgataaatatgatca |
116 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34706265 |
actaagctcaatgtagcgtgtaactgttttaaggtttctgaattgcggtaacttctgatattgacattgtttatttcagtgtcaatgataaatatgatca |
34706364 |
T |
|
| Q |
117 |
gaagcattacaatttgcgttgaaaatgcatattataggatctattttgtaaacaccgcgatttatgaactgtgtttgtcctctctaattgagtaaagtag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34706365 |
gaagcattacaatttgcgttgaaaatgcttattataggatcaattttgtaaacaccgcgatttatgaactgtgtttgtcctctctaattgagtaaagtag |
34706464 |
T |
|
| Q |
217 |
gatcaccactatttagaacgatagttataagcaatgtctgtg |
258 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34706465 |
gatcaccactatttagaacgatatttataagcaatgtctgtg |
34706506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 17 - 258
Target Start/End: Original strand, 34706624 - 34706867
Alignment:
| Q |
17 |
actaagctcaatgtagcgtgtaaccgtttt-aaggtttctgaattgcgataacttctgatattgacattgtttatttcagtgtcaatgataaatatgatc |
115 |
Q |
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||||||||||||| |||||||||||||||| ||||||| ||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
34706624 |
actaagctcaatgcagcgtgtaaccgtttttaaggtttttgaattgcggtgacttctgatattgacattttttatttcagtgtcaatgataaatatgatc |
34706723 |
T |
|
| Q |
116 |
agaagcattacaatttgcgttgaaaatgcatattataggatctattttgtaaacaccgcgattta-tgaactgtgtttgtcctctctaattgagtaaagt |
214 |
Q |
| |
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|||||||||| |||| || ||||||||| |||||||||||| ||||| || ||| ||| ||||| |||| ||||| |||||| | |||||||| ||||| |
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| T |
34706724 |
agaagcattaatattttcggtgaaaatgcttattataggatcaattttatagacaacgcaatttattgaattgtgtctgtcctgtttaattgagcaaagt |
34706823 |
T |
|
| Q |
215 |
aggatcaccactatttagaacgatagttataagcaatgtctgtg |
258 |
Q |
| |
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||||||||| |||||||||| ||||||||||||||||||||||| |
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| T |
34706824 |
aggatcaccgctatttagaaagatagttataagcaatgtctgtg |
34706867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 124
Target Start/End: Original strand, 34706058 - 34706165
Alignment:
| Q |
17 |
actaagctcaatgtagcgtgtaaccgttttaaggtttctgaattgcgataacttctgatattgacattgtttatttcagtgtcaatgataaatatgatca |
116 |
Q |
| |
|
|||||| || ||||||| || |||||||||||||||| ||||||||| | |||| || ||||||| |||| |||||| ||||||||||||||||||| |
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| T |
34706058 |
actaagttctatgtagcatgaaaccgttttaaggtttttgaattgcggtgacttaagagattgacaatgttgatttcaacgtcaatgataaatatgatcg |
34706157 |
T |
|
| Q |
117 |
gaagcatt |
124 |
Q |
| |
|
|||||||| |
|
|
| T |
34706158 |
gaagcatt |
34706165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 258
Target Start/End: Original strand, 41869474 - 41869715
Alignment:
| Q |
17 |
actaagctcaatgtagcgtgtaaccgttttaaggtttctgaattgcgataacttctgatattgacattgtttatttcagtgtcaatgataaatatgatca |
116 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41869474 |
actaagctcaatgtagcgtgtaactgttttaaggtttctgaattgcggtaacttctgatattgacattgtttatttcagtgtcaatgataaatatgatca |
41869573 |
T |
|
| Q |
117 |
gaagcattacaatttgcgttgaaaatgcatattataggatctattttgtaaacaccgcgatttatgaactgtgtttgtcctctctaattgagtaaagtag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41869574 |
gaagcattacaatttgcgttgaaaatgcttattataggatcaattttgtaaacaccgcgatttatgaactgtgtttgtcctctctaattgagtaaagtag |
41869673 |
T |
|
| Q |
217 |
gatcaccactatttagaacgatagttataagcaatgtctgtg |
258 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
41869674 |
gatcaccactatttagaacgatatttataagcaatgtctgtg |
41869715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 17 - 258
Target Start/End: Original strand, 41869833 - 41870076
Alignment:
| Q |
17 |
actaagctcaatgtagcgtgtaaccgtttt-aaggtttctgaattgcgataacttctgatattgacattgtttatttcagtgtcaatgataaatatgatc |
115 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||| ||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
41869833 |
actaagctcaatgcagcgtgtaaccgtttttaaggtttttgaattgcggtgacttctgatattgacattttttatttcagtgtcaatgataaatatgatc |
41869932 |
T |
|
| Q |
116 |
agaagcattacaatttgcgttgaaaatgcatattataggatctattttgtaaacaccgcgattta-tgaactgtgtttgtcctctctaattgagtaaagt |
214 |
Q |
| |
|
|||||||||| |||| || ||||||||| |||||||||||| ||||| || ||| ||| ||||| |||| ||||| |||||| | |||||||| ||||| |
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| T |
41869933 |
agaagcattaatattttcggtgaaaatgcttattataggatcaattttatagacaacgcaatttattgaattgtgtctgtcctgtttaattgagcaaagt |
41870032 |
T |
|
| Q |
215 |
aggatcaccactatttagaacgatagttataagcaatgtctgtg |
258 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||||| |
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|
| T |
41870033 |
aggatcaccgctatttagaaagatagttataagcaatgtctgtg |
41870076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 124
Target Start/End: Complemental strand, 28547143 - 28547036
Alignment:
| Q |
17 |
actaagctcaatgtagcgtgtaaccgttttaaggtttctgaattgcgataacttctgatattgacattgtttatttcagtgtcaatgataaatatgatca |
116 |
Q |
| |
|
|||||| || ||||||| || |||||||||||||||| ||||||||| | |||| || ||||||| |||| |||||| ||||||||||||||||||| |
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| T |
28547143 |
actaagttctatgtagcatgaaaccgttttaaggtttttgaattgcggtgacttaagagattgacaatgttgatttcaacgtcaatgataaatatgatcg |
28547044 |
T |
|
| Q |
117 |
gaagcatt |
124 |
Q |
| |
|
|||||||| |
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|
| T |
28547043 |
gaagcatt |
28547036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 124
Target Start/End: Original strand, 41869267 - 41869374
Alignment:
| Q |
17 |
actaagctcaatgtagcgtgtaaccgttttaaggtttctgaattgcgataacttctgatattgacattgtttatttcagtgtcaatgataaatatgatca |
116 |
Q |
| |
|
|||||| || ||||||| || |||||||||||||||| ||||||||| | |||| || ||||||| |||| |||||| ||||||||||||||||||| |
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|
| T |
41869267 |
actaagttctatgtagcatgaaaccgttttaaggtttttgaattgcggtgacttaagagattgacaatgttgatttcaacgtcaatgataaatatgatcg |
41869366 |
T |
|
| Q |
117 |
gaagcatt |
124 |
Q |
| |
|
|||||||| |
|
|
| T |
41869367 |
gaagcatt |
41869374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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