View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17795_high_49 (Length: 267)
Name: NF17795_high_49
Description: NF17795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17795_high_49 |
 | |
|
| [»] scaffold0103 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0103 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 26 - 125
Target Start/End: Complemental strand, 4626 - 4526
Alignment:
| Q |
26 |
cctaaaagtactaatgggattggactcttatttgatgattttgtt-agcatgaaacaaccacttcctgcataagcactctttgtcattctttgtccatga |
124 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||| |||| |||||| |
|
|
| T |
4626 |
cctaaaattacttatgggattggactcttatttgatgattttttttagcatgaaacaaccacttcatgcataagcactctttgtcattatttggccatga |
4527 |
T |
|
| Q |
125 |
c |
125 |
Q |
| |
|
| |
|
|
| T |
4526 |
c |
4526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 173 - 250
Target Start/End: Complemental strand, 4459 - 4382
Alignment:
| Q |
173 |
ctaaaaaattgggacgtttttcaagcatcttcgatgcgagcgtttgtctaaagagttgttttctcttgatctttgggc |
250 |
Q |
| |
|
|||||||| |||||| |||||||||| |||||||||||||||||||||||| | | ||||| |||||||| |||||| |
|
|
| T |
4459 |
ctaaaaaaatgggacatttttcaagcgtcttcgatgcgagcgtttgtctaaggcgacgttttttcttgatcattgggc |
4382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 26 - 125
Target Start/End: Original strand, 2635383 - 2635483
Alignment:
| Q |
26 |
cctaaaagtactaatgggattggactcttatttgatgattttgtt-agcatgaaacaaccacttcctgcataagcactctttgtcattctttgtccatga |
124 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||| |||| |||||| |
|
|
| T |
2635383 |
cctaaaattacttatgggattggactcttatttgatgattttttttagcatgaaacaaccacttcatgcataagcactctttgtcattatttggccatga |
2635482 |
T |
|
| Q |
125 |
c |
125 |
Q |
| |
|
| |
|
|
| T |
2635483 |
c |
2635483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 2566594 - 2566679
Alignment:
| Q |
26 |
cctaaaagtactaatgggattggactcttatttgatgattttgttagcatgaaacaaccacttcctgcataagcactctttgtcat |
111 |
Q |
| |
|
|||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||| |
|
|
| T |
2566594 |
cctaaaagtacttattggattgaactcttatttgatgattttgttagcatgaaacaaccacttcccaaataaacactccttgtcat |
2566679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 2593378 - 2593427
Alignment:
| Q |
39 |
atgggattggactcttatttgatgattttgttagcatgaaacaaccactt |
88 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2593378 |
atgggattggactcttatttgatgattttgttagcatgaaagaaccactt |
2593427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 173 - 250
Target Start/End: Original strand, 2635550 - 2635627
Alignment:
| Q |
173 |
ctaaaaaattgggacgtttttcaagcatcttcgatgcgagcgtttgtctaaagagttgttttctcttgatctttgggc |
250 |
Q |
| |
|
|||||||| |||||| |||||||||| |||||||||||||||||||||||| | | ||||| |||||||| |||||| |
|
|
| T |
2635550 |
ctaaaaaaatgggacatttttcaagcgtcttcgatgcgagcgtttgtctaaggcgacgttttttcttgatcattgggc |
2635627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University