View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17795_high_5 (Length: 599)

Name: NF17795_high_5
Description: NF17795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17795_high_5
NF17795_high_5
[»] chr8 (7 HSPs)
chr8 (272-588)||(31030171-31030482)
chr8 (18-266)||(31031356-31031605)
chr8 (292-378)||(3810705-3810792)
chr8 (303-396)||(19711888-19711980)
chr8 (316-378)||(33473858-33473921)
chr8 (314-378)||(40041264-40041328)
chr8 (291-351)||(44344703-44344763)
[»] chr7 (5 HSPs)
chr7 (291-396)||(42148730-42148835)
chr7 (292-363)||(19365550-19365621)
chr7 (292-363)||(26502585-26502656)
chr7 (292-363)||(26590058-26590129)
chr7 (315-361)||(47523217-47523263)
[»] chr3 (8 HSPs)
chr3 (275-378)||(54718329-54718432)
chr3 (313-388)||(32319337-32319413)
chr3 (312-362)||(29750904-29750954)
chr3 (303-363)||(35585364-35585424)
chr3 (297-396)||(11433667-11433765)
chr3 (292-363)||(33461243-33461314)
chr3 (292-363)||(33573597-33573668)
chr3 (292-362)||(33342821-33342891)
[»] chr4 (4 HSPs)
chr4 (275-396)||(54734621-54734742)
chr4 (314-388)||(14272948-14273022)
chr4 (275-368)||(44253880-44253973)
chr4 (292-388)||(44255703-44255799)
[»] chr2 (4 HSPs)
chr2 (303-377)||(40606891-40606965)
chr2 (274-378)||(5188859-5188963)
chr2 (278-369)||(24127945-24128036)
chr2 (312-363)||(32035176-32035227)
[»] chr1 (5 HSPs)
chr1 (303-378)||(32055173-32055248)
chr1 (320-378)||(40371707-40371766)
chr1 (291-353)||(14099558-14099620)
chr1 (292-378)||(12259152-12259236)
chr1 (296-357)||(33365209-33365271)
[»] scaffold0057 (1 HSPs)
scaffold0057 (310-368)||(39509-39567)
[»] scaffold1414 (1 HSPs)
scaffold1414 (315-363)||(971-1019)
[»] chr5 (2 HSPs)
chr5 (313-388)||(5125270-5125346)
chr5 (339-383)||(13678709-13678753)


Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 272 - 588
Target Start/End: Complemental strand, 31030482 - 31030171
Alignment:
Q  272 atgaggaagttataccatgtacccatacatatataccctcaccccaacatttgacataaa-gtaccaaatttaccctttatataaaataaaactcaatca 370  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  31030482 atgaggaagttataccttgtacccctacatatataccctcaccccaacatttgacataaaagtaccaaatttaccttttatataaaataaaactcaatca 31030383  T
Q  371 ctctttcatttgttcacctccaccttcttgtggaaacattcccaacagtgagcatttccattaccattaccggaactcttctttcctaaaatccatttga 470  Q
    |||||||||||||||||||||      ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31030382 ctctttcatttgttcacctcc------ttgtggaaacattcccaacggtgagcatttccattaccattaccggaactcttctttcctaaaatccatttga 31030289  T
Q  471 tttgannnnnnncttttaccggcatcgactcttgcaactagattttgattttacaataatcgtttctccatatggttgagaacataaataaaaatccatt 570  Q
    |||||       |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  31030288 tttgatttttttcttttaccggcatcgactcttgcaactagattttgattttaccataatcgtttctccatatggttgagaacataaataaaaatccatt 31030189  T
Q  571 tgatttagttcctcctat 588  Q
    ||||||||||||||||||    
T  31030188 tgatttagttcctcctat 31030171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 31031605 - 31031356
Alignment:
Q  18 gtgaaaacgtttactcaccaactacttgtttcacacatcacaagatataaaattttccatgcttaaaataagacgacnnnnnnnnn-cactaacaacttg 116  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||          |||||| || |||    
T  31031605 gtgaaaacgtttactcaccaactacttgtttcacgcatcacaagatataaaattttccatgcttaaaataagacgacaaaaaaaaaacactaagaatttg 31031506  T
Q  117 gaccgacgatggcagagacgtatggtctgtgcgacatggcccttgttgatagcttgtgtttaagtggattttaatatacttggtttgacgacgagcagaa 216  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  31031505 gaccgacgatggcagagacgtctggtctgtgcgacatggcccttgttgatagcttgtgtttaagtggattttaatatacttggttcaacgacgagcagaa 31031406  T
Q  217 ccattgatgacgtcagagaggcttggtcattgcgatagaatgtcatataa 266  Q
    | |||||| |||| |||||||||||||||||||||| ||||||| |||||    
T  31031405 ctattgatcacgttagagaggcttggtcattgcgatggaatgtcgtataa 31031356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 292 - 378
Target Start/End: Original strand, 3810705 - 3810792
Alignment:
Q  292 acccatacatatataccctcaccccaacatttgacataaagtaccaaatttaccc-tttatataaaataaaactcaatcactctttca 378  Q
    |||| ||||| |||||| | |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3810705 acccctacatttataccttgaccccaacatttgacacaaagtaccaaatttacccttttatataaaataaaactcaatcactctttca 3810792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 303 - 396
Target Start/End: Complemental strand, 19711980 - 19711888
Alignment:
Q  303 tataccctcaccccaacatttgacataaagtaccaaatttaccctttatataaaataaaactcaatcactctttcatttgttcacctccacctt 396  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||| | ||||||| |||||| || |||||| |||||||    
T  19711980 tataccttcaccccaacatttgacataaactaccaaatttaccctttatataaaacaaaccacaatcaccctttcactt-ttcaccgccacctt 19711888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 316 - 378
Target Start/End: Complemental strand, 33473921 - 33473858
Alignment:
Q  316 caacatttgacataaagtaccaaatttacccttt-atataaaataaaactcaatcactctttca 378  Q
    |||||||||||| || |||||||||||||| ||| |||||||| ||||||||||||||||||||    
T  33473921 caacatttgacacaatgtaccaaatttacctttttatataaaagaaaactcaatcactctttca 33473858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 378
Target Start/End: Complemental strand, 40041328 - 40041264
Alignment:
Q  314 cccaacatttgacataaagtaccaaatttaccctttatataaaataaaactcaatcactctttca 378  Q
    |||||||||| ||| ||| |||||||||||| ||||  |||||| ||||| ||||||||| ||||    
T  40041328 cccaacatttaacacaaactaccaaatttactctttgcataaaacaaaacacaatcactcgttca 40041264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 291 - 351
Target Start/End: Complemental strand, 44344763 - 44344703
Alignment:
Q  291 tacccatacatatataccctcaccccaacatttgacataaagtaccaaatttaccctttat 351  Q
    ||||| ||||| ||||||||||||||||||||| | | ||| |||||| |||||| |||||    
T  44344763 tacccctacatttataccctcaccccaacattttaaaaaaactaccaattttaccatttat 44344703  T

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Target: chr7 (Bit Score: 66; Significance: 7e-29; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 291 - 396
Target Start/End: Original strand, 42148730 - 42148835
Alignment:
Q  291 tacccatacatatataccctcaccccaacatttgacataaagtaccaaatttaccctttatataaaataaaactcaatcactctttcatttgttcacctc 390  Q
    ||||| ||||| |||||  | |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||| |    
T  42148730 tacccctacatttatacgttgaccccaacatttgacacaaagtaccaaatttaccctttatataaaataaaacttaatcactctttcacttattcacccc 42148829  T
Q  391 cacctt 396  Q
    ||||||    
T  42148830 cacctt 42148835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 292 - 363
Target Start/End: Original strand, 19365550 - 19365621
Alignment:
Q  292 acccatacatatataccctcaccccaacatttgacataaagtaccaaatttaccctttatataaaataaaac 363  Q
    |||| ||||| |||||| | |||||||||||| ||||||| ||||||| ||||||||||||||||| |||||    
T  19365550 acccctacatttatacctttaccccaacatttaacataaaataccaaaattaccctttatataaaacaaaac 19365621  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 363
Target Start/End: Original strand, 26502585 - 26502656
Alignment:
Q  292 acccatacatatataccctcaccccaacatttgacataaagtaccaaatttaccctttatataaaataaaac 363  Q
    |||| ||||| |||||| | |||||||||||||||| ||| |||| |||||||||| | ||||||| |||||    
T  26502585 acccctacatttatacctttaccccaacatttgacacaaactacccaatttaccctctttataaaacaaaac 26502656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 363
Target Start/End: Complemental strand, 26590129 - 26590058
Alignment:
Q  292 acccatacatatataccctcaccccaacatttgacataaagtaccaaatttaccctttatataaaataaaac 363  Q
    |||| ||||| |||||| | |||||||||||||||| ||| |||| |||||||||| | ||||||| |||||    
T  26590129 acccctacatttatacctttaccccaacatttgacacaaactacccaatttaccctctttataaaacaaaac 26590058  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 315 - 361
Target Start/End: Original strand, 47523217 - 47523263
Alignment:
Q  315 ccaacatttgacataaagtaccaaatttaccctttatataaaataaa 361  Q
    |||||||| |||| ||| || ||||||||||||||||||||||||||    
T  47523217 ccaacattagacacaaactatcaaatttaccctttatataaaataaa 47523263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 275 - 378
Target Start/End: Original strand, 54718329 - 54718432
Alignment:
Q  275 aggaagttataccatgtacccatacatatataccctcaccccaacatttgacataaagtaccaaatttaccctttatataaaataaaactcaatcactct 374  Q
    |||||||||||||    |||| ||||| |||||| | |||||||||||| ||||||||| |||||||||| ||||||||||||||||| ||||||| |||    
T  54718329 aggaagttataccccacacccctacatttataccttgaccccaacatttaacataaagttccaaatttactctttatataaaataaaattcaatcattct 54718428  T
Q  375 ttca 378  Q
    ||||    
T  54718429 ttca 54718432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 313 - 388
Target Start/End: Original strand, 32319337 - 32319413
Alignment:
Q  313 ccccaacatttgacataaagtaccaaatttaccctttatataaaataaaactcaa-tcactctttcatttgttcacc 388  Q
    ||||||||||| ||| ||| ||||||||||| ||||||||||||||||||| ||| |||| |||||| |||||||||    
T  32319337 ccccaacattttacacaaactaccaaatttatcctttatataaaataaaacacaattcaccctttcacttgttcacc 32319413  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 312 - 362
Target Start/End: Complemental strand, 29750954 - 29750904
Alignment:
Q  312 accccaacatttgacataaagtaccaaatttaccctttatataaaataaaa 362  Q
    |||||||||||||| ||||||||| ||||||| ||||||||||||||||||    
T  29750954 accccaacatttgatataaagtactaaatttatcctttatataaaataaaa 29750904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 363
Target Start/End: Complemental strand, 35585424 - 35585364
Alignment:
Q  303 tataccctcaccccaacatttgacataaagtaccaaatttaccctttatataaaataaaac 363  Q
    |||||| |||||||||||||| | | ||| |||||| ||||||||||||| ||||||||||    
T  35585424 tataccttcaccccaacattttaaacaaactaccaattttaccctttataaaaaataaaac 35585364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 396
Target Start/End: Complemental strand, 11433765 - 11433667
Alignment:
Q  297 tacatatataccctcaccccaacatttgacataaagtaccaaatttaccctttatataaaataaaactcaatcactctttcatttgttcacctccacctt 396  Q
    ||||| |||||  |||||||||||||| ||| ||| || ||||||||||||||  |||||| ||||| ||||||| | |||| || |||||| |||||||    
T  11433765 tacatttatactttcaccccaacatttaacacaaactatcaaatttaccctttgcataaaacaaaacacaatcacccattcactt-ttcacccccacctt 11433667  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 363
Target Start/End: Original strand, 33461243 - 33461314
Alignment:
Q  292 acccatacatatataccctcaccccaacatttgacataaagtaccaaatttaccctttatataaaataaaac 363  Q
    |||| ||||| |||||| | |||||||||||||||| ||| || | |||||||||| ||||||||| |||||    
T  33461243 acccctacatttatacctttaccccaacatttgacacaaactatccaatttaccctctatataaaacaaaac 33461314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 363
Target Start/End: Original strand, 33573597 - 33573668
Alignment:
Q  292 acccatacatatataccctcaccccaacatttgacataaagtaccaaatttaccctttatataaaataaaac 363  Q
    |||| ||||| |||||| | |||||||||||| ||| ||| ||| ||| ||||||||||||||||| |||||    
T  33573597 acccctacatttatacctttaccccaacatttaacacaaactacaaaaattaccctttatataaaacaaaac 33573668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 292 - 362
Target Start/End: Complemental strand, 33342891 - 33342821
Alignment:
Q  292 acccatacatatataccctcaccccaacatttgacataaagtaccaaatttaccctttatataaaataaaa 362  Q
    |||| |||||||||||||||| |||||||||| ||  |||||||| | ||||||| | ||||| |||||||    
T  33342891 acccttacatatataccctcatcccaacattttactcaaagtacccattttacccctcatatataataaaa 33342821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 275 - 396
Target Start/End: Original strand, 54734621 - 54734742
Alignment:
Q  275 aggaagttataccatgtacccatacatatataccctcaccccaacatttgacataaagtaccaaatttaccctttatat-aaaataaaactcaatcactc 373  Q
    |||||||||||||   ||||| ||||  |||||| |||||| |||||| |||| ||| ||||||||||||||||||||| |||||||||| ||||||| |    
T  54734621 aggaagttataccccatacccctacaattataccttcaccctaacattagacacaaactaccaaatttaccctttatataaaaataaaacacaatcac-c 54734719  T
Q  374 tttcatttgttcacctccacctt 396  Q
     |||| ||||||||| |||||||    
T  54734720 attcacttgttcacccccacctt 54734742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 314 - 388
Target Start/End: Original strand, 14272948 - 14273022
Alignment:
Q  314 cccaacatttgacataaagtaccaaatttaccctttatataaaataaaactcaatcactctttcatttgttcacc 388  Q
    |||||||||| ||  ||| |||| ||||||||||||||||||||||||||||| | ||| ||||| |||||||||    
T  14272948 cccaacatttcactcaaactacctaatttaccctttatataaaataaaactcagttactttttcacttgttcacc 14273022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 275 - 368
Target Start/End: Original strand, 44253880 - 44253973
Alignment:
Q  275 aggaagttataccatgtacccatacatatataccctcaccccaacatttgacataaagtaccaaatttaccctttatataaaataaaactcaat 368  Q
    |||||||||||||    ||||||| || |||||| |||||||||||||| ||| |||||   || |||||||||||||||||||||||| ||||    
T  44253880 aggaagttataccccacacccatatatttataccttcaccccaacatttaacacaaagttttaattttaccctttatataaaataaaacacaat 44253973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 388
Target Start/End: Complemental strand, 44255799 - 44255703
Alignment:
Q  292 acccatacatatataccctcaccccaacatttgacataaagtaccaaatttaccctttatataaaataaaactcaatcactctttcatttgttcacc 388  Q
    |||| ||||| |||| | ||||| ||| |||| ||| ||||| |||| ||| |||||||||||||||||||  |||| ||||||||| |||||||||    
T  44255799 acccctacatttatatcttcacctcaatatttaacacaaagttccaattttgccctttatataaaataaaatacaataactctttcacttgttcacc 44255703  T

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Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 303 - 377
Target Start/End: Complemental strand, 40606965 - 40606891
Alignment:
Q  303 tataccctcaccccaacatttgacataaagtaccaaatttaccctttatataaaataaaactcaatcactctttc 377  Q
    |||||| |||||||||||||||||| ||| ||||||||||||||||||||||||| || || ||||||| |||||    
T  40606965 tataccttcaccccaacatttgacacaaactaccaaatttaccctttatataaaacaatacacaatcaccctttc 40606891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 378
Target Start/End: Complemental strand, 5188963 - 5188859
Alignment:
Q  274 gaggaagttataccatgtacccatacatatataccctcaccccaacatttgacataaagtaccaaatttaccctttatataaaataaaactcaatcactc 373  Q
    ||||||||||||||    |||| ||||| |||| | | |||||||| ||| ||||||||| | || | ||||||||| ||||||||||| ||||||||||    
T  5188963 gaggaagttataccccacacccctacatttatatcttgaccccaacctttaacataaagttcgaattataccctttacataaaataaaattcaatcactc 5188864  T
Q  374 tttca 378  Q
    |||||    
T  5188863 tttca 5188859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 278 - 369
Target Start/End: Original strand, 24127945 - 24128036
Alignment:
Q  278 aagttataccatgtacccatacatatataccctcaccccaacatttgacataaagtaccaaatttaccctttatataaaataaaactcaatc 369  Q
    ||||||||||   ||||| ||||| |||||| |||||||||||||| ||| ||| | ||||||||| | ||||||||||| ||||| |||||    
T  24127945 aagttataccccatacccctacatttataccttcaccccaacattttacacaaacttccaaatttatcttttatataaaacaaaacacaatc 24128036  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 312 - 363
Target Start/End: Complemental strand, 32035227 - 32035176
Alignment:
Q  312 accccaacatttgacataaagtaccaaatttaccctttatataaaataaaac 363  Q
    |||||||||||| |||| || |||||||||||||||||||||||||| ||||    
T  32035227 accccaacattttacatgaactaccaaatttaccctttatataaaattaaac 32035176  T

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Target: chr1 (Bit Score: 44; Significance: 9e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 303 - 378
Target Start/End: Complemental strand, 32055248 - 32055173
Alignment:
Q  303 tataccctcaccccaacatttgacataaagtaccaaatttaccctttatataaaataaaactcaatcactctttca 378  Q
    |||||| | |||| ||||||| ||| |||||  ||||||||||||||||||||||||| |||||||||||||||||    
T  32055248 tataccttgaccctaacatttaacacaaagtttcaaatttaccctttatataaaataatactcaatcactctttca 32055173  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 320 - 378
Target Start/End: Complemental strand, 40371766 - 40371707
Alignment:
Q  320 atttgacataaagtaccaaatttacccttt-atataaaataaaactcaatcactctttca 378  Q
    ||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||    
T  40371766 atttgacataaagtatcaaatttacccttttacataaaataaaactcaatcactctttca 40371707  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 291 - 353
Target Start/End: Complemental strand, 14099620 - 14099558
Alignment:
Q  291 tacccatacatatataccctcaccccaacatttgacataaagtaccaaatttaccctttatat 353  Q
    ||||| ||||| |||||| |||||||||| ||||| ||||| |||||||||||||||||||||    
T  14099620 tacccctacatttataccttcaccccaacttttgaaataaactaccaaatttaccctttatat 14099558  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 378
Target Start/End: Complemental strand, 12259236 - 12259152
Alignment:
Q  292 acccatacatatataccctcaccccaacatttgacataaagtaccaaatttaccctttatataaaataaaactcaatcactctttca 378  Q
    |||| ||||| |||||| | ||||||| |||||||||||| || |||||||| |||| ||  ||||||||||||  |||||||||||    
T  12259236 acccctacatttataccttgaccccaatatttgacataaactatcaaatttatccttaattcaaaataaaactc--tcactctttca 12259152  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 296 - 357
Target Start/End: Complemental strand, 33365271 - 33365209
Alignment:
Q  296 atacatatataccctcacccc-aacatttgacataaagtaccaaatttaccctttatataaaa 357  Q
    |||| |||||||| ||||||| ||||||||| ||||| || |||||||||||||| |||||||    
T  33365271 atacttatataccttcacccccaacatttgatataaactatcaaatttaccctttgtataaaa 33365209  T

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Target: scaffold0057 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 310 - 368
Target Start/End: Complemental strand, 39567 - 39509
Alignment:
Q  310 tcaccccaacatttgacataaagtaccaaatttaccctttatataaaataaaactcaat 368  Q
    |||||||||||||||||| ||| ||||||||||| ||||||||||||| ||||| ||||    
T  39567 tcaccccaacatttgacacaaactaccaaatttatcctttatataaaacaaaacacaat 39509  T

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Target: scaffold1414 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1414
Description:

Target: scaffold1414; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 315 - 363
Target Start/End: Original strand, 971 - 1019
Alignment:
Q  315 ccaacatttgacataaagtaccaaatttaccctttatataaaataaaac 363  Q
    ||||||||| | ||||| |||||||||||||||| ||||||||||||||    
T  971 ccaacattttatataaactaccaaatttacccttcatataaaataaaac 1019  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 313 - 388
Target Start/End: Original strand, 5125270 - 5125346
Alignment:
Q  313 ccccaacatttgacataaagtaccaaatttaccctttatataaaataaaactcaa-tcactctttcatttgttcacc 388  Q
    ||||||||||| | | ||| || |||||||||||||| ||||||||||||| ||| | || |||||| |||||||||    
T  5125270 ccccaacattttatacaaactatcaaatttaccctttttataaaataaaacacaatttaccctttcacttgttcacc 5125346  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 339 - 383
Target Start/End: Complemental strand, 13678753 - 13678709
Alignment:
Q  339 atttaccctttatataaaataaaactcaatcactctttcatttgt 383  Q
    |||||||||||||||||||||||||||| | ||| ||||| ||||    
T  13678753 atttaccctttatataaaataaaactcagttactttttcacttgt 13678709  T

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