View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17795_high_56 (Length: 235)
Name: NF17795_high_56
Description: NF17795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17795_high_56 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 16 - 219
Target Start/End: Original strand, 3916 - 4119
Alignment:
| Q |
16 |
gaagaattggtagccgtcttcaacaacctgtatgagtaaatttacaataagtttgtttagtttattcaataatggataaatgaatgaatgatcaatgtgt |
115 |
Q |
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| T |
3916 |
gaagaattggtagccgtcttcaacaacctgtatgagtaaatttacaataagtttgtttagtttattcaataatggataaatgaatgaatgatcaatgtgt |
4015 |
T |
|
| Q |
116 |
agtgtagtagtgaataacaaaattaacctgatgagcccgacatataagatcgagatcgnnnnnnnncaagaactcatctaccgtgtctggtccaaatgtg |
215 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4016 |
agtgtagtggtgaataacaaaattaacctgatgagcccgacatataagatcgagatcgtttttcttcaagaactcatctaccgtgtctggtccaaatgtg |
4115 |
T |
|
| Q |
216 |
tagg |
219 |
Q |
| |
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|||| |
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| T |
4116 |
tagg |
4119 |
T |
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