View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17795_high_6 (Length: 588)
Name: NF17795_high_6
Description: NF17795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17795_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 523; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 1 - 570
Target Start/End: Original strand, 32067194 - 32067761
Alignment:
| Q |
1 |
cactatagattgatgaaaagtgccgatgtaaatgtttcgtataatcagtttgaatatgcacatttagacttcacgttctcgcaccgtgaagaactcttgt |
100 |
Q |
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| T |
32067194 |
cactatagattgatgaaaagtgccgatgtaaatgtttcgtataatcagtttgaatatgcacatttagacttcacgttctcgcaccgtgaagaactcttgt |
32067293 |
T |
|
| Q |
101 |
catatgttatgtcgcgcttgcttcttgttgatccgaattcaaagcatcaagtgaatcaaagagttgaaaaatcagagcagaaaggacaagatgcagctga |
200 |
Q |
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| T |
32067294 |
cgtatgttatgtcgcgcttgcttcttgttgatccgaattcaaagcatcaagtgaatcaaagagttgaaaaatcagagcagaaaggacaagatgcagctga |
32067393 |
T |
|
| Q |
201 |
caagtagtttgtacaaaaagtttatacagtcgttgtcgaactggaaagttagccgagtggatcaaccaatattttttggcttgaacaacagttcctccct |
300 |
Q |
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| T |
32067394 |
caagtagtttgtacaaaaagtttatacagaagttgtcgaactggaaagttagccgagtggatcaaccaatattttttggcttgaacaacagttcctccct |
32067493 |
T |
|
| Q |
301 |
actcaggtacttttcgcattcgttgccggagccactttgcttcatccattgttggatggagcactgtttgtatgtttgattatagagctgtta--tgtgt |
398 |
Q |
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| T |
32067494 |
actcaggtacttttcgcattcgttgccggagccactttgcttcatccattgttggatggagcactgtttgtatgtttgattatagagctgttatgtgtgt |
32067593 |
T |
|
| Q |
399 |
actagggggtcatctttttctacaaacctttttctttctcatttgtaggaaaagtggaccttgaaaatatgttacttgttgttgtaacttgtaaatagtg |
498 |
Q |
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| T |
32067594 |
acta-ggggtcatctttttctacaaacctttttctttctcatttgtaggaaaagtggaccttgaaaatatgttac---ttgttgtaacttgtaaatagtg |
32067689 |
T |
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| Q |
499 |
ttctgattatcagaactgaacaaaggccaagagtgtagtttaattttgtatcatgtattattatgtatggtg |
570 |
Q |
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| T |
32067690 |
ttctgattatcggaactgaacaaaggccaagagtgtagtttaattttgtatcatgtattattatgtatggtg |
32067761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 42 - 155
Target Start/End: Complemental strand, 43706149 - 43706036
Alignment:
| Q |
42 |
taatcagtttgaatatgcacatttagacttcacgttctcgcaccgtgaagaactcttgtcatatgttatgtcgcgcttgcttcttgttgatccgaattca |
141 |
Q |
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|||| ||||||||||||| ||||| || || || ||||| || | ||||||||| ||||||||||| ||||| || ||| ||||||| || | |||||| |
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| T |
43706149 |
taatgagtttgaatatgctcatttggattttaccttctctcatcatgaagaacttttgtcatatgtcatgtcccgtttgtttcttgtggagacaaattca |
43706050 |
T |
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| Q |
142 |
aagcatcaagtgaa |
155 |
Q |
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| T |
43706049 |
aagcatgaagtgaa |
43706036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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