View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17795_high_61 (Length: 222)
Name: NF17795_high_61
Description: NF17795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17795_high_61 |
 | |
|
| [»] scaffold0076 (1 HSPs) |
| | |
|
| [»] scaffold0130 (1 HSPs) |
| | |
|
| [»] scaffold0208 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 14 - 206
Target Start/End: Complemental strand, 4281653 - 4281461
Alignment:
| Q |
14 |
tcatccctgatttcattaatactacaacaagggtgttgtacttcctacgtaattttcagggcctcaagattcaacaaatgaactgaatttctcatctcca |
113 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
4281653 |
tcatccctgatttcattaatactacagcaagggtgttgtacttcctacgtaattttcagggcctcaagattcaacaaacgaactcaatttctcatctcca |
4281554 |
T |
|
| Q |
114 |
tcagcccagttatcggtaaatgaagtggagtgtgtggctttctctcaacgccaacgacgtcacgaagatccgaccgacggtggaggtcaattc |
206 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4281553 |
tcagcccggttatcggtaaatgaagtgtagtgtgtggctttctctcaacgccaacgacgtcacgaagatccgaccgacagtggaggtcaattc |
4281461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 14 - 206
Target Start/End: Original strand, 31710235 - 31710427
Alignment:
| Q |
14 |
tcatccctgatttcattaatactacaacaagggtgttgtacttcctacgtaattttcagggcctcaagattcaacaaatgaactgaatttctcatctcca |
113 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
31710235 |
tcatccctgatttcattaatactacagcaagggtgttgtacttcctaagtaattttcagggcctcaagattcaacaaacgaactcaatttctcatctcca |
31710334 |
T |
|
| Q |
114 |
tcagcccagttatcggtaaatgaagtggagtgtgtggctttctctcaacgccaacgacgtcacgaagatccgaccgacggtggaggtcaattc |
206 |
Q |
| |
|
||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
31710335 |
tcagctcggttatcggtaaatgaagtggaatgtgtggctttctctcaacgccaacgacgtcacgaagatccgaccgacagtggagctcaattc |
31710427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 126
Target Start/End: Original strand, 14674605 - 14674717
Alignment:
| Q |
14 |
tcatccctgatttcattaatactacaacaagggtgttgtacttcctacgtaattttcagggcctcaagattcaacaaatgaactgaatttctcatctcca |
113 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||| || || |
|
|
| T |
14674605 |
tcatccctgatttcattaatactacagcaaggttgttgtacttcctaagtaattttcagggcctcaagattcaacaaacaaactcaatttctcacctaca |
14674704 |
T |
|
| Q |
114 |
tcagcccagttat |
126 |
Q |
| |
|
||| ||| ||||| |
|
|
| T |
14674705 |
tcaacccggttat |
14674717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 33 - 127
Target Start/End: Complemental strand, 20133967 - 20133873
Alignment:
| Q |
33 |
tactacaacaagggtgttgtacttcctacgtaattttcagggcctcaagattcaacaaatgaactgaatttctcatctccatcagcccagttatc |
127 |
Q |
| |
|
||||||| | ||||| |||||||||||| |||||||||||| ||||||||||||||||| |||| ||||||||| || ||||| ||| |||||| |
|
|
| T |
20133967 |
tactacagccagggtattgtacttcctaagtaattttcaggacctcaagattcaacaaacaaactcaatttctcacctacatcaacccggttatc |
20133873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 41 - 206
Target Start/End: Original strand, 17594765 - 17594930
Alignment:
| Q |
41 |
caagggtgttgtacttcctacgtaattttcagggcctcaagattcaacaaatgaactgaatttctcatctccatcagcccagttatcggtaaatgaagtg |
140 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
17594765 |
caagggtgttatacttcctaagtaattttcaggtcctcaagattcaacaaacgaactcaatttctcatctccatcagcctggttatcggtaaatgaagtg |
17594864 |
T |
|
| Q |
141 |
gagtgtgtggctttctctcaacgccaacgacgtcacgaagatccgaccgacggtggaggtcaattc |
206 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
17594865 |
gaatgtgtggctttctctcaacgccaacgacgtcacgaagatccgaccgacagtggagctcaattc |
17594930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 21 - 198
Target Start/End: Original strand, 8165876 - 8166061
Alignment:
| Q |
21 |
tgatttcattaatactacaacaagggtgttgtacttcctacgtaattttcagggcctcaagattcaacaaatgaactgaatttctcatctccatcagccc |
120 |
Q |
| |
|
||||||||||||||| |||| ||| |||||| |||||| ||||||||||||||||||||||||||| |||||||| |||||||||| |||| || ||| |
|
|
| T |
8165876 |
tgatttcattaataccacaa---gggcgttgtatttcctaagtaattttcagggcctcaagattcaacgaatgaactcaatttctcatttccaacaaccc |
8165972 |
T |
|
| Q |
121 |
agttatcggtaaa-----------tgaagtggagtgtgtggctttctctcaacgccaacgacgtcacgaagatccgaccgacggtggag |
198 |
Q |
| |
|
|||||||||||| |||||||| |||| |||||||||||||| |||||||||||||||||||| || |||| |||||| |
|
|
| T |
8165973 |
ggttatcggtaaaggaagtggaatggaagtggaatgtgcggctttctctcaacaccaacgacgtcacgaagatctgatcgacagtggag |
8166061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 14 - 175
Target Start/End: Original strand, 11203476 - 11203631
Alignment:
| Q |
14 |
tcatccctgatttcattaatactacaacaagggtgttgtacttcctacgtaattttcagggcctcaagattcaacaaatgaactgaatttctcatctcca |
113 |
Q |
| |
|
|||||| ||||||||||| ||||||| ||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||| || ||||| || || |
|
|
| T |
11203476 |
tcatccttgatttcattactactacagcaaaggtattgtacttcctaagtaattttcagggcctcaagattcaacaaatgaactcaacttctcccctaca |
11203575 |
T |
|
| Q |
114 |
tcagcccagttatcggtaaatgaagtggagtgtgtggctttctctcaacgccaacgacgtca |
175 |
Q |
| |
|
||| ||| |||||| || |||| | ||| |||||||||||||||||||||||||||| |
|
|
| T |
11203576 |
tcaacccggttatc-----at-cagtgaaatgtatggctttctctcaacgccaacgacgtca |
11203631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 12325797 - 12325891
Alignment:
| Q |
33 |
tactacaacaagggtgttgtacttcctacgtaattttcagggcctcaagattcaacaaatgaactgaatttctcatctccatcagcccagttatc |
127 |
Q |
| |
|
||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||| || ||||| ||| |||||| |
|
|
| T |
12325797 |
tactacagcaagggtattgtacttcctaagtaattttcagggcctcaagattcaacaaacgaactcaatttctcacctacatcaacccggttatc |
12325891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 47903 - 47997
Alignment:
| Q |
33 |
tactacaacaagggtgttgtacttcctacgtaattttcagggcctcaagattcaacaaatgaactgaatttctcatctccatcagcccagttatc |
127 |
Q |
| |
|
||||||| |||| || |||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||| || ||||| ||| |||||| |
|
|
| T |
47903 |
tactacagcaagagtattgtacttcctaagtaattttcagggcctcaagattcaacaaacgaactcaatttctcacctacatcaacccggttatc |
47997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 44358104 - 44358198
Alignment:
| Q |
33 |
tactacaacaagggtgttgtacttcctacgtaattttcagggcctcaagattcaacaaatgaactgaatttctcatctccatcagcccagttatc |
127 |
Q |
| |
|
||||||| | ||||| |||||||||||| |||||||||||| ||||||||||||||||| |||| ||||||||| || ||||| ||| |||||| |
|
|
| T |
44358104 |
tactacagccagggtattgtacttcctaagtaattttcaggacctcaagattcaacaaacaaactcaatttctcacctacatcaacccggttatc |
44358198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0130 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0130
Description:
Target: scaffold0130; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 206
Target Start/End: Complemental strand, 17373 - 17327
Alignment:
| Q |
160 |
aacgccaacgacgtcacgaagatccgaccgacggtggaggtcaattc |
206 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||| ||||||| |
|
|
| T |
17373 |
aacgccaacgacgtcacgaagatacgaccgacagtggagttcaattc |
17327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0208 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0208
Description:
Target: scaffold0208; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 115
Target Start/End: Complemental strand, 383 - 343
Alignment:
| Q |
75 |
cctcaagattcaacaaatgaactgaatttctcatctccatc |
115 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
383 |
cctcaagattcaacaaacaaactcaatttctcatctccatc |
343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University