View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17795_high_9 (Length: 532)
Name: NF17795_high_9
Description: NF17795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17795_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 11 - 519
Target Start/End: Original strand, 23591723 - 23592223
Alignment:
| Q |
11 |
atcatcagtttgcacaaactcaatgagtaataaactat--gagtgtagtaca--ctactctttgacttgttccttgatcataaaatatgtctttatattt |
106 |
Q |
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| T |
23591723 |
atcatcagtttgcacaaactcaatgagtaataaactatatgagtgtagtacatgctactctttgacttgttccttgatcataaaatatgtctttatattt |
23591822 |
T |
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| Q |
107 |
gtccatagatctttgtcttgatcttctgcgtttgtctttcagtgtagaaggttgacttttagtctagattatttaccatggagggtcaacttcaagaact |
206 |
Q |
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| T |
23591823 |
gtccatagatcttcgtcttgatcttctgcgtttgtctttcggtgtagaaggtt------------agattatttatcatggagggtcaacttcaagaact |
23591910 |
T |
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| Q |
207 |
tccttcacacttgaacatacatcagagtatccaattgttttcaaatacacttttattatcaaaacgttttactgttgtaaagaatccttaaataaactat |
306 |
Q |
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| T |
23591911 |
tccttcacacttgaacatacatcagagtatccaattgttttcaaatacacttttattatcaaaacgttttactgttgtaaagaatccttaaataaactat |
23592010 |
T |
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| Q |
307 |
agttagaaaataaaacataagactcaatctaatgactgtgttcagtaaattttgttatcaataaaatttgttcaataaaattgttctcaccccagcttag |
406 |
Q |
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| T |
23592011 |
agttagaaaataaaacataagactcaatctaatgactgtgttcagtaaattttgttatcaataaaatttgttcaataaaattgttctcaccccagcttag |
23592110 |
T |
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| Q |
407 |
ccacacccaatcatcaccctagctgaaccacatccaaaaattacatagttcaactctcattcatcttccaccatctctgtaactctggtccatcgaagaa |
506 |
Q |
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| T |
23592111 |
ccacacccaatcatcaccctagctgaaccacacccaaaaatgacatagttcaactctcattcatcttccaccatctctgtacctctggtccatcgaagaa |
23592210 |
T |
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| Q |
507 |
aaacaccataatt |
519 |
Q |
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| T |
23592211 |
aaacaccataatt |
23592223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 109 - 271
Target Start/End: Original strand, 29826811 - 29826974
Alignment:
| Q |
109 |
ccatagatctttgtcttgatcttctgcgtttgtctttcagtgtagaaggttgacttttagtctagattatttaccatggagggtcaacttcaa-gaactt |
207 |
Q |
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||||||| ||| ||||||||||| || ||||| ||| || ||||| | |||||||||||| |||| |||||||||| |||| |||| | ||| | ||| |
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| T |
29826811 |
ccatagaacttcgtcttgatcttatgtgtttgcttttaagagtagatgattgacttttagtatagaatatttaccatagaggatcaagtacaattatctt |
29826910 |
T |
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| Q |
208 |
ccttcacacttgaacatacatcagagtatccaattgttttcaaatacacttttattatcaaaac |
271 |
Q |
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| T |
29826911 |
catgcacacttgaacgaacatgagagtatccaattattataaaatactttgttattatcaaaac |
29826974 |
T |
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