View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17795_low_11 (Length: 503)
Name: NF17795_low_11
Description: NF17795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17795_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 42 - 495
Target Start/End: Complemental strand, 52239038 - 52238587
Alignment:
| Q |
42 |
tcgtctagtacttactattcttaacccatttgattgaaaattccatattttatttcctgttaacaacaataaagcatgttggtatgccgtaaaaccattg |
141 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52239038 |
tcgtctagtacttactattcttaacccatttgattgaaaattccatattttatttcctgttaacaacaataaagcatgttggtatgccgtaaaaccattg |
52238939 |
T |
|
| Q |
142 |
attcagttaaggtttttagatccttggttccatccaagtacaaaattgttctaaaatggcttccatcatgaataaaggtactttggccaaactgtggctg |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52238938 |
attcagttaaggtttttagatccttggttccatccaagtacaaaattgttctaaaatggcttccatcatgaataaaggtactttggccaaactgtggctg |
52238839 |
T |
|
| Q |
242 |
gaagcctgtgcctcttgttgatataattgaagggaatgcggttaaaagatcttatcaaagagctttactcagtctgcatccagataagttgcagcaaaag |
341 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
52238838 |
gaagcctgtgcctcttgttgatataattgaagggaacgcggttaaaagatcttatcaaagagctttactcagtctgcatccggataagttgcagcaaaag |
52238739 |
T |
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| Q |
342 |
ggtgctacttcagaccaaaagtacactgcagaaaaagtttttgatattttacaggtactatgtttgggtcaatttattagcattacaaaaagtttgtctc |
441 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
52238738 |
ggtgctacttcagaccaaaagtacactgcagaaaaagtttttgatattttgcaggtactatgtttgggtcaatttattagcattacaaaaag--tgtctc |
52238641 |
T |
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| Q |
442 |
tttcataggcaatttctagaatcttgcttgaaattggtcataaacattcatctc |
495 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52238640 |
tttcataggcaatttctagaatcttgcttgaaattggtcataaacattcatctc |
52238587 |
T |
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