View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17795_low_14 (Length: 484)

Name: NF17795_low_14
Description: NF17795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17795_low_14
NF17795_low_14
[»] chr7 (3 HSPs)
chr7 (23-477)||(4047067-4047521)
chr7 (23-408)||(3752786-3753171)
chr7 (227-357)||(9664309-9664439)
[»] chr4 (1 HSPs)
chr4 (227-357)||(13535333-13535463)
[»] chr6 (10 HSPs)
chr6 (205-348)||(6472058-6472201)
chr6 (206-399)||(6466351-6466544)
chr6 (205-348)||(6506503-6506646)
chr6 (254-369)||(6529265-6529380)
chr6 (206-332)||(6519604-6519730)
chr6 (209-348)||(6497694-6497833)
chr6 (228-318)||(6458416-6458506)
chr6 (245-330)||(6460857-6460942)
chr6 (245-330)||(7204144-7204230)
chr6 (245-330)||(7238895-7238981)


Alignment Details
Target: chr7 (Bit Score: 411; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 23 - 477
Target Start/End: Original strand, 4047067 - 4047521
Alignment:
Q  23 gggcttcctctaaccaaaaagaatcttaggtttgaagagggaatatcaagagtcacaccaagatcactataagatgaaataacatggttttttggtatat 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4047067 gggcttcctctaaccaaaaagaatcttaggtttgaagagggaatatcaagagtcacaccaagatcactataagatgaaataacatggttttttggtatat 4047166  T
Q  123 ttgtgtgagttttttgtgaggaagatattgtaagatctggtgaaaacacttggtacaacattgctgttgaaaagaggagaagagggtatgaaacagatag 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4047167 ttgtgtgagttttttgtgaggaagatattgtaagatctggtgaaaaaacttggtacaacattgctgttgaaaagaggagaagagggtatgaaacagatag 4047266  T
Q  223 ggaagagtttgaggatttgacaaggtaagggtgaatgtattcatgttgatcaccattttggagaacaaagttttgaaagaaagaatttgtagggaggggt 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| || ||||||||||| |||    
T  4047267 ggaagagtttgaggatttgacaaggtaagggtgaatgtattcatgttgatcaccattttgtagaacaaaattttggaagaatgagtttgtagggagaggt 4047366  T
Q  323 gtggatagtaggttttgtgagaagaaatttgaagggtttggaaggactgttgaatgagtttgaggaaataagaaaggaacagaagacatggtgatttggt 422  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  4047367 gtggatagtaagttttgtgagaagaaatttgaagggtttggaaggacagttgaatgagtttgaggaaataggaaaggaacagaagacattgtgatttggt 4047466  T
Q  423 tgataagagttgttacaatgtttgtgatgtgtgtggtgtttgtttttcctttgct 477  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4047467 tgataagagttgttacaatgtttgtgatgtgtgtggtgtttgtttttcctttgct 4047521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 23 - 408
Target Start/End: Complemental strand, 3753171 - 3752786
Alignment:
Q  23 gggcttcctctaaccaaaaagaatcttaggtttgaagagggaatatcaagagtcacaccaagatcactataagatgaaataacatggttttttggtatat 122  Q
    |||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||| | | |    
T  3753171 gggcttcctctaactaaaaagaatcttagatttgaagagggaatgtcaagagtcacaccaagatcactatatgatgagataacatggttttttgttgtgt 3753072  T
Q  123 ttgtgtgagttttttgtgaggaagatattgtaagatctggtgaaaacacttggtacaacattgctgttgaaaagaggagaagagggtatgaaacagatag 222  Q
    ||||||||| |||||||||||| || ||||| |||||||||||||| |||||||||||||||| || ||||||||||||||||||||| |||| ||| ||    
T  3753071 ttgtgtgagatttttgtgaggatgaaattgtgagatctggtgaaaaaacttggtacaacattgttgctgaaaagaggagaagagggtaggaaatagagag 3752972  T
Q  223 ggaagagtttgaggatttgacaaggtaagggtgaatgtattcatgttgatcaccattttggagaacaaagttttgaaagaaagaatttgtagggaggggt 322  Q
    |||| |||||||||||||||  ||||||||||||||||||||| ||   |||||||| ||||||||||||||||| |||||||| |||||||||||||||    
T  3752971 ggaaaagtttgaggatttgatgaggtaagggtgaatgtattcaggtgtgtcaccattgtggagaacaaagttttggaagaaagagtttgtagggaggggt 3752872  T
Q  323 gtggatagtaggttttgtgagaagaaatttgaagggtttggaaggactgttgaatgagtttgaggaaataagaaaggaacagaaga 408  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||    
T  3752871 gtggatagtaggttttgtgagaagaagtttgaagggtttgggaggactgttgaatgagtttgaggaaataggaaaggaagagaaga 3752786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 227 - 357
Target Start/End: Complemental strand, 9664439 - 9664309
Alignment:
Q  227 gagtttgaggatttgacaaggtaagggtgaatgtattcatgttgatcaccattttggagaacaaagttttgaaagaaagaatttgtagggaggggtgtgg 326  Q
    ||||| || |||||||| || ||||||||||||||||||| ||| |||||||||| ||||||||||||||| |||||||| ||||||||||||||||| |    
T  9664439 gagttcgacgatttgacgagataagggtgaatgtattcatattggtcaccatttttgagaacaaagttttggaagaaagagtttgtagggaggggtgtag 9664340  T
Q  327 atagtaggttttgtgagaagaaatttgaagg 357  Q
    |||| || ||| | ||||||||||| |||||    
T  9664339 atagaagatttggagagaagaaattggaagg 9664309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 227 - 357
Target Start/End: Complemental strand, 13535463 - 13535333
Alignment:
Q  227 gagtttgaggatttgacaaggtaagggtgaatgtattcatgttgatcaccattttggagaacaaagttttgaaagaaagaatttgtagggaggggtgtgg 326  Q
    ||||| || |||||||| || ||||||||||||||||||| ||| |||||||||| ||||||||||||||| |||||||| ||||||||||||||||| |    
T  13535463 gagttcgacgatttgacgagataagggtgaatgtattcatattggtcaccatttttgagaacaaagttttggaagaaagagtttgtagggaggggtgtag 13535364  T
Q  327 atagtaggttttgtgagaagaaatttgaagg 357  Q
    |||| || ||| | ||||||||||| |||||    
T  13535363 atagaagatttggagagaagaaattggaagg 13535333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 9e-28; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 205 - 348
Target Start/End: Complemental strand, 6472201 - 6472058
Alignment:
Q  205 agggtatgaaacagatagggaagagtttgaggatttgacaaggtaagggtgaatgtattcatgttgatcaccattttggagaacaaagttttgaaagaaa 304  Q
    |||||| |||||||| || || |||||||| |||||||  |||||||| |||||||||||| |||| ||||||||||  || |||| |||||| ||||||    
T  6472201 agggtaagaaacagaaagtgatgagtttgatgatttgatgaggtaaggatgaatgtattcaggttggtcaccattttttaggacaatgttttggaagaaa 6472102  T
Q  305 gaatttgtagggaggggtgtggatagtaggttttgtgagaagaa 348  Q
    || ||||||||||||||||||||||| |  ||| ||||||||||    
T  6472101 gagtttgtagggaggggtgtggatagcaaatttggtgagaagaa 6472058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 206 - 399
Target Start/End: Original strand, 6466351 - 6466544
Alignment:
Q  206 gggtatgaaacagatagggaagagtttgaggatttgacaaggtaagggtgaatgtattcatgttgatcaccattttggagaacaaagttttgaaagaaag 305  Q
    ||||| |||| ||| || || |||||||| |||||||  || || || |||||||||||| |||| |||||||||| ||||||||||||||| |||||||    
T  6466351 gggtaagaaagagaaagtgatgagtttgaagatttgatgagatatggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaaag 6466450  T
Q  306 aatttgtagggaggggtgtggatagtaggttttgtgagaagaaatttgaagggtttggaaggactgttgaatgagtttgaggaaataagaaagg 399  Q
    | ||||| ||||||||||||||||| || ||| | |||||||| ||||  ||||  || ||||| || |||||||| || || |||| ||||||    
T  6466451 agtttgtggggaggggtgtggatagcagatttggagagaagaagtttgtggggtcagggaggaccgtggaatgagtctgtgggaataggaaagg 6466544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 205 - 348
Target Start/End: Original strand, 6506503 - 6506646
Alignment:
Q  205 agggtatgaaacagatagggaagagtttgaggatttgacaaggtaagggtgaatgtattcatgttgatcaccattttggagaacaaagttttgaaagaaa 304  Q
    ||||||||| ||||| || || |||||||| |||||||  |||||||| |||| ||||||| ||  ||||||||| | ||||||||||||||| ||||||    
T  6506503 agggtatgagacagaaagtgatgagtttgatgatttgatgaggtaaggatgaaagtattcaggtgcatcaccattgttgagaacaaagttttggaagaaa 6506602  T
Q  305 gaatttgtagggaggggtgtggatagtaggttttgtgagaagaa 348  Q
    || |||||||| |||||||||||||| || ||| | ||||||||    
T  6506603 gagtttgtaggcaggggtgtggatagcagatttggagagaagaa 6506646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 254 - 369
Target Start/End: Original strand, 6529265 - 6529380
Alignment:
Q  254 tgaatgtattcatgttgatcaccattttggagaacaaagttttgaaagaaagaatttgtagggaggggtgtggatagtaggttttgtgagaagaaatttg 353  Q
    |||||||||||| |||| |||||||| | ||||||||||||||| |||||||| ||||||||||||||||||||||| || ||| | |||||||| || |    
T  6529265 tgaatgtattcaggttggtcaccattgttgagaacaaagttttggaagaaagagtttgtagggaggggtgtggatagcagatttggagagaagaatttgg 6529364  T
Q  354 aagggtttggaaggac 369  Q
    | ||||  ||||||||    
T  6529365 aggggtcaggaaggac 6529380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 206 - 332
Target Start/End: Complemental strand, 6519730 - 6519604
Alignment:
Q  206 gggtatgaaacagatagggaagagtttgaggatttgacaaggtaagggtgaatgtattcatgttgatcaccattttggagaacaaagttttgaaagaaag 305  Q
    ||||| |||||||| || || |||||||| ||||| |  ||||| || ||||| |||||| |||| ||||| |||| ||||||||||||||| |||||||    
T  6519730 gggtaagaaacagaaagtgatgagtttgatgatttaatgaggtatggatgaatatattcaggttggtcaccgtttttgagaacaaagttttggaagaaag 6519631  T
Q  306 aatttgtagggaggggtgtggatagta 332  Q
    | ||||||||||||||| |||||||||    
T  6519630 agtttgtagggaggggtttggatagta 6519604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 209 - 348
Target Start/End: Original strand, 6497694 - 6497833
Alignment:
Q  209 tatgaaacagatagggaagagtttgaggatttgacaaggtaagggtgaatgtattcatgttgatcaccattttggagaacaaagttttgaaagaaagaat 308  Q
    ||||||||||| || || |||| ||| |||||||  |||||||| ||||  |||||| |||| ||||| || | ||||||||||||||| |||||||| |    
T  6497694 tatgaaacagaaagtgatgagtctgatgatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttggaagaaagagt 6497793  T
Q  309 ttgtagggaggggtgtggatagtaggttttgtgagaagaa 348  Q
    |||| ||||||||| | ||||| || ||||  ||||||||    
T  6497794 ttgtggggaggggtttagatagcagatttttagagaagaa 6497833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 228 - 318
Target Start/End: Original strand, 6458416 - 6458506
Alignment:
Q  228 agtttgaggatttgacaaggtaagggtgaatgtattcatgttgatcaccattttggagaacaaagttttgaaagaaagaatttgtagggag 318  Q
    |||||||||||||||  ||||||||||||||||| ||| ||   ||||||||||| |||||||| ||||| |||||||| ||||| |||||    
T  6458416 agtttgaggatttgatgaggtaagggtgaatgtactcaggtgtgtcaccattttgtagaacaaaattttggaagaaagagtttgttgggag 6458506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 245 - 330
Target Start/End: Complemental strand, 6460942 - 6460857
Alignment:
Q  245 aggtaagggtgaatgtattcatgttgatcaccattttggagaacaaagttttgaaagaaagaatttgtagggaggggtgtggatag 330  Q
    |||||||| |||| ||||||  |||| |||||||| | ||||||||||||||| ||||| || ||||||||||| ||| |||||||    
T  6460942 aggtaaggatgaaagtattccggttggtcaccattgtcgagaacaaagttttggaagaaggagtttgtagggagtggtttggatag 6460857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 330
Target Start/End: Complemental strand, 7204230 - 7204144
Alignment:
Q  245 aggtaagggtgaatgtattcatgttgatcaccattttggagaacaaagttttgaaagaaagaatttgtaggga-ggggtgtggatag 330  Q
    ||||| || |||||||||||| |||| ||||||||   ||||||||||||||| ||||||||| | || |||| |||||||||||||    
T  7204230 aggtagggatgaatgtattcaggttggtcaccattgatgagaacaaagttttggaagaaagaaatagtggggagggggtgtggatag 7204144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 330
Target Start/End: Complemental strand, 7238981 - 7238895
Alignment:
Q  245 aggtaagggtgaatgtattcatgttgatcaccattttggagaacaaagttttgaaagaaagaatttgtaggga-ggggtgtggatag 330  Q
    ||||| || |||||||||||| |||| ||||||||   ||||||||||||||| ||||||||| | || |||| |||||||||||||    
T  7238981 aggtagggatgaatgtattcaggttggtcaccattgatgagaacaaagttttggaagaaagaaatagtggggagggggtgtggatag 7238895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University