View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17795_low_15 (Length: 451)
Name: NF17795_low_15
Description: NF17795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17795_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 187 - 442
Target Start/End: Complemental strand, 52625256 - 52625001
Alignment:
| Q |
187 |
tttggtaccaattccctaaccctaaaaactacttttagcttatttcaaacttataagtgcttaattaattaagatttctgttttaaggttgtgttgccgt |
286 |
Q |
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| T |
52625256 |
tttggtaccaattccctaaccctaaaaactacttttagcttatgtcaaacttattagtgcttaattaattaagatttctgttttaaggttgttttgccgt |
52625157 |
T |
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| Q |
287 |
atctgaaatcgaagctacattcaatctacaataaagaaagggaagcaagaattcaggccactctttggggagatgaaaatgaatcatataccttcaatgc |
386 |
Q |
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| T |
52625156 |
atctgaaatcgaagctgcattcaatctacaataaagaaagggaagcaagaattcaggccactatttggggagatgaaaatgaatcatataccttcaatgc |
52625057 |
T |
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| Q |
387 |
tcgtgcctccgttacaacactcatcacaaaaagatttcagaaaattgtagaattat |
442 |
Q |
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| T |
52625056 |
tcgtgcctccgttacaacactcatcacaaaaagatttcagaaaattgtaggattat |
52625001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 52625439 - 52625312
Alignment:
| Q |
1 |
cgaatctttctcattactcatgctcgttctcgaagctcacagtttacgaaccaccgatgcttctttttctgaatccctttacggtctccgtagaagaccc |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52625439 |
cgaatctttctcattactcatgctcgttcttgaagctcacagtttacgaaccactgatgcttctttttctgaatccctttacggtctccgtagaagaccc |
52625340 |
T |
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| Q |
101 |
gctaatatcaaactcaacgataatgata |
128 |
Q |
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| T |
52625339 |
gctaatatcaaactcaacgacaatgata |
52625312 |
T |
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