View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17795_low_16 (Length: 443)
Name: NF17795_low_16
Description: NF17795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17795_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 2322020 - 2322287
Alignment:
| Q |
1 |
tgtatgtcctagctaaaacagggaaattatgtttaggatcatagtgtctcatacaatatagattatgtttcctccctaaacatctgtggtcttaaattat |
100 |
Q |
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| T |
2322020 |
tgtatgtcctagctaaaacagggaaattatgtttaggatcatagtgtctcatacaatatagattatgtttcctccctaaacatctgtggtcttaaattat |
2322119 |
T |
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| Q |
101 |
agggttgtaacttgtaattttgagtgtgcagaagtgatgcatagaatagagttatggccagaatgaaatggtacttcatgattttcttaataacaaaatc |
200 |
Q |
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| T |
2322120 |
agggttgtaacttgtaattttgagtgtgctgaagtgatgcatagaatagagttatggccagaatgaaatggtacttcatgattttcttaataacaagatc |
2322219 |
T |
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| Q |
201 |
cacagttttagagctagtttaatttgtcaacctgagttaatcatcataaattactgtatcctaaatacaccta |
273 |
Q |
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| T |
2322220 |
cacagttttagagctag-----tttgtcaacctgagttaatcatcatcaattactgtatcctaaatactccta |
2322287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 57 - 193
Target Start/End: Original strand, 2294657 - 2294793
Alignment:
| Q |
57 |
tatagattatgtttcctccctaaacatctgtggtcttaaattatagggttgtaacttgtaattttgagtgtgcagaagtgatgcatagaatagagttatg |
156 |
Q |
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| T |
2294657 |
tatagattatgtttcctccctaaacatctgtggtcttaaattatagggttgtaacttgtaattttgagtgtgcagaagtgatgcatagaatagagttatg |
2294756 |
T |
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| Q |
157 |
gccagaatgaaatggtacttcatgattttcttaataa |
193 |
Q |
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| T |
2294757 |
gccaaagtgaaatggtgcttcatgattttcttaataa |
2294793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 272 - 427
Target Start/End: Original strand, 2322420 - 2322575
Alignment:
| Q |
272 |
tatttttgtaaatactttccatctatggtcttcaaagaatgtcctgaaaacgaggttaatatctctcttttatnnnnnnnnnnnnnnnnnnnnnnnntta |
371 |
Q |
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| T |
2322420 |
tatttttgtaaatactttccatctatggtcttcaaagaatgtcctgaaaacaaggttaatatctctcttttataaaaataaaaaaaaggaataaaaatta |
2322519 |
T |
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| Q |
372 |
actaatcaagacaattggtgaccaatcatgagggtgaataaaaatatagtgaatag |
427 |
Q |
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| T |
2322520 |
actaatcaagacaattggtgaccaatcatgagggtgaataaaaatatagtgaatag |
2322575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 132 - 205
Target Start/End: Original strand, 2304461 - 2304534
Alignment:
| Q |
132 |
aagtgatgcatagaatagagttatggccagaatgaaatggtacttcatgattttcttaataacaaaatccacag |
205 |
Q |
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| T |
2304461 |
aagtgatgcatagaatagagttatggccaaagtgaaatggtgcttcatgattttcttaataacaagatccacag |
2304534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 2331568 - 2331656
Alignment:
| Q |
1 |
tgtatgtcctagctaaaacagggaaattatgtttaggatcatagtgtctcatacaatatagattatgtttcctccctaaacatctgtggtc |
91 |
Q |
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| T |
2331568 |
tgtatgtcctagctgagac--ggaaattatgtttaggtttataatatctcatacaatatagattgtgcatcctccctaaacatttgtggtc |
2331656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 152
Target Start/End: Original strand, 2332248 - 2332315
Alignment:
| Q |
82 |
atctgtggtcttaaattatagggttgtaacttgtaattttgagtgtgcagaagtgatgcatagaatagagt |
152 |
Q |
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| T |
2332248 |
atctgtggtcttaatttc-agggttgtaatttgtaattttga--gtgcagaaatgatgcaaagaatagagt |
2332315 |
T |
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