View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17795_low_18 (Length: 415)
Name: NF17795_low_18
Description: NF17795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17795_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 46844594 - 46844198
Alignment:
| Q |
1 |
tctaattctaatcggacacaaattagcaaatcatactttcctttgatgtaataagacagacacggcacatcaagattgttactagtttaaaaaatttgaa |
100 |
Q |
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| T |
46844594 |
tctaattctaatcggacacaaattagcaaattatactttcctttgatgtaataagacagacacggcacatcaagattgttactagtttaaaaaatttgaa |
46844495 |
T |
|
| Q |
101 |
taacgttatcacatatgtccatgttgtgttagtgtctgacgtcaacatttttcgacccacggttggaccacaagagatgccttgtaacattactttctct |
200 |
Q |
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| T |
46844494 |
taacgttatcacatatgtccatgttgtgttagtgtctgacgtcaacatttttcgacccacggttggaccacaagagatgccttgtaacattactttctct |
46844395 |
T |
|
| Q |
201 |
ttgacttcac---caccataagccaaatttttctaataaactacaccctccggtcactaaatattgaaaatttgacact----taaattaatatgtatga |
293 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||| || |
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| T |
46844394 |
ttgacttcaccaacaccataagccaaatttttctaataaactaca--------tctctaaatattgaaaatttgacacttaaataaattaatatgtacga |
46844303 |
T |
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| Q |
294 |
agcacttatacttcaaagtgtatcacatatgttggtgtccgacacaacactcatagaagtggttatattcaatcacttctattctcttaagtcttaacat |
393 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46844302 |
agcacttatacttcaaagtgtatcacatatgttggtgtccgacacaacactcatagaagtggttatattcaatcacttctattctcttaagtcttgacat |
46844203 |
T |
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