View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17795_low_19 (Length: 414)

Name: NF17795_low_19
Description: NF17795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17795_low_19
NF17795_low_19
[»] chr3 (2 HSPs)
chr3 (1-306)||(11429624-11429929)
chr3 (370-400)||(11429530-11429560)
[»] scaffold0181 (2 HSPs)
scaffold0181 (162-305)||(5038-5182)
scaffold0181 (162-305)||(677-821)
[»] chr6 (2 HSPs)
chr6 (162-305)||(7401553-7401697)
chr6 (162-305)||(24952808-24952952)
[»] chr5 (2 HSPs)
chr5 (162-305)||(23613109-23613253)
chr5 (162-305)||(23844505-23844649)
[»] chr4 (2 HSPs)
chr4 (162-305)||(52474457-52474601)
chr4 (162-305)||(17556795-17556939)
[»] chr1 (3 HSPs)
chr1 (162-305)||(26079022-26079166)
chr1 (162-305)||(23831459-23831603)
chr1 (164-305)||(24642130-24642272)
[»] chr8 (1 HSPs)
chr8 (155-305)||(18763961-18764112)


Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 11429929 - 11429624
Alignment:
Q  1 gcaggtttgcaatgaacaagttgatgccgagttggcatctgctgcgaccaatggctatgtttttcgactgtgatttccttgattaatgtgttttcttctc 100  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11429929 gcaggtttgcaatgaacaagttgatgccgagttggcgtctgctgcgaccagtggctatgtttttcgactgtgatttccttgattaatgtgttttcttctc 11429830  T
Q  101 ggtcccttcacatgcttcaatgcagtttcatcattcaacacagtatgagccttttccatgatgtacgataattgcccttgtgttttttccattcctcccg 200  Q
    | ||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11429829 gttcccttcgcatgctgcaatgcagtttcataattcaacacagtatgagccttttccatgatgtacgataattgcccttgtgttttttccattcctcccg 11429730  T
Q  201 ttcatcatataataaatttgatgaagttttccagctaacctatgaaagtttgtctctacaagagggtgatgatgaggttgccatacacaaaaatcctgca 300  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11429729 ttcatcatataataaatttgatgaagtttttcagctaacctatgaaagtttgtctctacaagagggtgatgatgaggttgccatacacaaaaatcctgca 11429630  T
Q  301 ataaac 306  Q
    ||||||    
T  11429629 ataaac 11429624  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 400
Target Start/End: Complemental strand, 11429560 - 11429530
Alignment:
Q  370 aacaccatcaacattcttgcatttgaacctg 400  Q
    |||||||||||||||||||||||||||||||    
T  11429560 aacaccatcaacattcttgcatttgaacctg 11429530  T

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Target: scaffold0181 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 162 - 305
Target Start/End: Complemental strand, 5182 - 5038
Alignment:
Q  162 tgtacgataattgcccttgtgttttttccattcctcccgttcatcatataataaatttgatgaa-gttttccagctaacctatgaaagtttgtctctaca 260  Q
    ||||||||||||||||||   ||||||| |||||| ||||||||||||||||||||||||| || || ||  ||||| ||||||||||||| ||||||||    
T  5182 tgtacgataattgcccttacattttttcaattccttccgttcatcatataataaatttgataaacgtcttgtagctaccctatgaaagtttctctctaca 5083  T
Q  261 agagggtgatgatgaggttgccatacacaaaaatcctgcaataaa 305  Q
    |||| |||||||||||||| ||||  |||||||||||||||||||    
T  5082 agagtgtgatgatgaggttcccatctacaaaaatcctgcaataaa 5038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 162 - 305
Target Start/End: Complemental strand, 821 - 677
Alignment:
Q  162 tgtacgataattgcccttgtgttttttccattcctcccgttcatcatataataaatttgatgaa-gttttccagctaacctatgaaagtttgtctctaca 260  Q
    ||||||||||||||||||  | |||||| |||||| |||||||||||||||||||| |||| || || || |||||| ||||||||||||| ||| ||||    
T  821 tgtacgataattgcccttacggtttttcaattccttccgttcatcatataataaatctgataaacgtcttgcagctaccctatgaaagtttctctataca 722  T
Q  261 agagggtgatgatgaggttgccatacacaaaaatcctgcaataaa 305  Q
    |||| |||||||||||||| ||||  |||||||||||||||||||    
T  721 agagtgtgatgatgaggttcccatctacaaaaatcctgcaataaa 677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 162 - 305
Target Start/End: Original strand, 7401553 - 7401697
Alignment:
Q  162 tgtacgataattgcccttgtgttttttccattcctcccgttcatcatataataaatttgatgaa-gttttccagctaacctatgaaagtttgtctctaca 260  Q
    ||||||||||||||||||  |||||||| |||||| ||||||||||||||| |||| |||| || || || |||||| ||||||||||||| ||||||||    
T  7401553 tgtacgataattgcccttacgttttttcaattcctgccgttcatcatataacaaatctgataaacgtcttgcagctaccctatgaaagtttctctctaca 7401652  T
Q  261 agagggtgatgatgaggttgccatacacaaaaatcctgcaataaa 305  Q
    |||| |||||||||||||||||||  ||||||||||| |||||||    
T  7401653 agagtgtgatgatgaggttgccatctacaaaaatcctacaataaa 7401697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 162 - 305
Target Start/End: Original strand, 24952808 - 24952952
Alignment:
Q  162 tgtacgataattgcccttgtgttttttccattcctcccgttcatcatataataaatttgatgaa-gttttccagctaacctatgaaagtttgtctctaca 260  Q
    ||||||||||||||||||   ||||||| |||| |  |||||||||||||||||||||||| || || || |||||| ||||||||||||| ||||||||    
T  24952808 tgtacgataattgcccttacattttttcaattcatgtcgttcatcatataataaatttgataaacgtcttgcagctaccctatgaaagtttctctctaca 24952907  T
Q  261 agagggtgatgatgaggttgccatacacaaaaatcctgcaataaa 305  Q
    |||| |||||||||||||| ||||  |||||||||||||||||||    
T  24952908 agagtgtgatgatgaggttcccatctacaaaaatcctgcaataaa 24952952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 162 - 305
Target Start/End: Complemental strand, 23613253 - 23613109
Alignment:
Q  162 tgtacgataattgcccttgtgttttttccattcctcccgttcatcatataataaatttgatgaa-gttttccagctaacctatgaaagtttgtctctaca 260  Q
    ||||||||||||||||||  |||||||| |||||| |||||||||||||||||||| |||| || || || ||||||  |||||||||||| | ||||||    
T  23613253 tgtacgataattgcccttacgttttttcaattccttccgttcatcatataataaatctgataaacgtcttgcagctacactatgaaagtttctatctaca 23613154  T
Q  261 agagggtgatgatgaggttgccatacacaaaaatcctgcaataaa 305  Q
    |||| |||||||||||||| ||||  |||||||||||||||||||    
T  23613153 agagtgtgatgatgaggttcccatctacaaaaatcctgcaataaa 23613109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 162 - 305
Target Start/End: Complemental strand, 23844649 - 23844505
Alignment:
Q  162 tgtacgataattgcccttgtgttttttccattcctcccgttcatcatataataaatttgatgaa-gttttccagctaacctatgaaagtttgtctctaca 260  Q
    ||||||||||||||||||  |||||||| |||||| |||||||||||||||||||| |||| || || || ||||||  |||||||||||| | ||||||    
T  23844649 tgtacgataattgcccttacgttttttcaattccttccgttcatcatataataaatctgataaacgtcttgcagctacactatgaaagtttctatctaca 23844550  T
Q  261 agagggtgatgatgaggttgccatacacaaaaatcctgcaataaa 305  Q
    |||| |||||||||||||| ||||  |||||||||||||||||||    
T  23844549 agagtgtgatgatgaggttcccatctacaaaaatcctgcaataaa 23844505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 162 - 305
Target Start/End: Original strand, 52474457 - 52474601
Alignment:
Q  162 tgtacgataattgcccttgtgttttttccattcctcccgttcatcatataataaatttgatgaa-gttttccagctaacctatgaaagtttgtctctaca 260  Q
    ||||||||||||||||||  |||||||| |||||| ||||||||||||||| |||| |||| || || || |||||| ||||||||||||| ||||||||    
T  52474457 tgtacgataattgcccttacgttttttcaattcctgccgttcatcatataacaaatctgataaacgtcttgcagctaccctatgaaagtttctctctaca 52474556  T
Q  261 agagggtgatgatgaggttgccatacacaaaaatcctgcaataaa 305  Q
    |||| |||||||||||||| ||||  ||||||||||| |||||||    
T  52474557 agagtgtgatgatgaggttcccatctacaaaaatcctacaataaa 52474601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 162 - 305
Target Start/End: Original strand, 17556795 - 17556939
Alignment:
Q  162 tgtacgataattgcccttgtgttttttccattcctcccgttcatcatataataaatttgatgaa-gttttccagctaacctatgaaagtttgtctctaca 260  Q
    ||||||||||||||||||  |||||||| ||||||  |||||||||||||| |||| |||| || || || |||||| ||||||||||||| ||||||||    
T  17556795 tgtacgataattgcccttacgttttttcaattcctgtcgttcatcatataacaaatctgataaacgtcttgcagctaccctatgaaagtttctctctaca 17556894  T
Q  261 agagggtgatgatgaggttgccatacacaaaaatcctgcaataaa 305  Q
    |||| |||||||||||||| ||||  ||||||||||| |||||||    
T  17556895 agagtgtgatgatgaggttcccatctacaaaaatcctacaataaa 17556939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 162 - 305
Target Start/End: Original strand, 26079022 - 26079166
Alignment:
Q  162 tgtacgataattgcccttgtgttttttccattcctcccgttcatcatataataaatttgatgaa-gttttccagctaacctatgaaagtttgtctctaca 260  Q
    ||||||||||||||||||  |||||||| |||||| ||||||||||||||| |||| |||| || || || |||||| ||||||||||||| ||||||||    
T  26079022 tgtacgataattgcccttacgttttttcaattcctgccgttcatcatataacaaatctgataaacgtcttgcagctaccctatgaaagtttctctctaca 26079121  T
Q  261 agagggtgatgatgaggttgccatacacaaaaatcctgcaataaa 305  Q
    |||| |||||||||||||| ||||  ||||||||||| |||||||    
T  26079122 agagtgtgatgatgaggttcccatctacaaaaatcctacaataaa 26079166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 162 - 305
Target Start/End: Original strand, 23831459 - 23831603
Alignment:
Q  162 tgtacgataattgcccttgtgttttttccattcctcccgttcatcatataataaatttgatgaa-gttttccagctaacctatgaaagtttgtctctaca 260  Q
    ||||||||||||||||||  |||||||| |||||| ||||||||||||||| |||| |||| || || || |||||| ||||||||||||| ||||||||    
T  23831459 tgtacgataattgcccttacgttttttcaattcctgccgttcatcatataacaaatctgataaacgtcttgcagctaccctatgaaagtttctctctaca 23831558  T
Q  261 agagggtgatgatgaggttgccatacacaaaaatcctgcaataaa 305  Q
    ||||  ||||||||||||| ||||  | ||||||||| |||||||    
T  23831559 agagtatgatgatgaggttcccatctagaaaaatcctacaataaa 23831603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 164 - 305
Target Start/End: Complemental strand, 24642272 - 24642130
Alignment:
Q  164 tacgataattgcccttgtgttttttccattcctcccgttcatcatataataaatttgatgaa-gttttccagctaacctatgaaagtttgtctctacaag 262  Q
    |||||||| |||| ||  |||||||| ||| || ||||| |||||||||||||| |||| || || || |||||| ||||||||||||| ||||||||||    
T  24642272 tacgataactgcctttacgttttttcaatttctgccgtttatcatataataaatctgataaacgtcttgcagctaccctatgaaagtttctctctacaag 24642173  T
Q  263 agggtgatgatgaggttgccatacacaaaaatcctgcaataaa 305  Q
    || |||||||||||||| ||||  |||| |||| |||||||||    
T  24642172 agtgtgatgatgaggttcccatctacaataatcatgcaataaa 24642130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 155 - 305
Target Start/End: Complemental strand, 18764112 - 18763961
Alignment:
Q  155 tccatgatgtacgataattgcccttgtgttttttccattcctcccgttcatcatataataaatttgatgaa-gttttccagctaacctatgaaagtttgt 253  Q
    ||||| |||||||||||||||||||  |||||||| |||||| |||||||||||||||||||| |||| || || || ||||||  |||||||||||| |    
T  18764112 tccattatgtacgataattgcccttacgttttttcaattccttccgttcatcatataataaatctgataaacgtcttgcagctacactatgaaagtttct 18764013  T
Q  254 ctctacaagagggtgatgatgaggttgccatacacaaaaatcctgcaataaa 305  Q
    ||||||||||| |||||||||||||| ||||  ||||||||| |||| ||||    
T  18764012 ctctacaagagtgtgatgatgaggttcccatctacaaaaatcttgcagtaaa 18763961  T

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