View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17795_low_2 (Length: 688)
Name: NF17795_low_2
Description: NF17795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17795_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 572; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 23 - 671
Target Start/End: Original strand, 12020063 - 12020710
Alignment:
| Q |
23 |
gaaaggccaagaacaactaaataagaaactaccaggaaagataaagcattatgacacctagtggagaaatgaacatgctttttcaaaaaagaa-gaatga |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
12020063 |
gaaaggccaagaacaactaaataagaaactaccaggaaagataaagcattatgacacctagtggagaaatgaacatgctttttcaaaaaagaaagaatga |
12020162 |
T |
|
| Q |
122 |
acatagacacaaaagcagtcaggtacgtacgaggttcttgtgtggatacataatcactaagtgaacaaacacaacaaaaccggtgagatac----aatac |
217 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
12020163 |
acatggacacaaaagcagtcaggtacgtacgaggttcttgtgtggatatataatcaccaagtgaacaaacacaacaaaaccggtgagatacatacaatac |
12020262 |
T |
|
| Q |
218 |
aaggttccttgctttttctgagtaatacaaattaattaactaaaactggtaccaaatttaaagactaatcagaaccaatggtaaggaattgaagtggcta |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12020263 |
aaggttccttgctttttctgagtaatacaaattaattaactaaaactggtaccaaatttaaagactaatcagaaccaatggtaaggaattgaagtggcta |
12020362 |
T |
|
| Q |
318 |
acatgtcagcagaatgcaaatgcgccacgtgtctatcatatatgtttgagtgggacccaccattgtcatcctccactcatggcacatgttataaatttca |
417 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12020363 |
acatgtcagtagaatgcaaatgcgccacgtgtctatcatatatgtttgagtgggacccaccattgtcatcctccactcatggcacatgttataaatttca |
12020462 |
T |
|
| Q |
418 |
tgtacaaatcagaagctatggttgttatttgccaccatcttcaaatctgaaaaacattatag-tcaatgccaggaatcacaggtccttcagattattcta |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
12020463 |
tgtacaaatcagaagctatggttgttatttgccaccatcttcaaatctgaaaaacattatagaacaatgccaggaatcacaggtccttcagattattcta |
12020562 |
T |
|
| Q |
517 |
aagaacctattcgtcacccctctcttcaaattaactccaaggcaagctcaaattccattttcattatttattcacaaatttatttcctttttctataacc |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12020563 |
aagaacctattcgtcacccctctcttcaaattaactccaaggcaagctcaaattccattttcattatttattcacaaatttatttcctttttctataacc |
12020662 |
T |
|
| Q |
617 |
atatactatatacattgctatttatatcgagtttcaaatgattttaatgtatcgg |
671 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12020663 |
-------atatacattgctatttatatcgagtttcaaatgattttaacgtatcgg |
12020710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 558
Target Start/End: Complemental strand, 8474258 - 8474181
Alignment:
| Q |
481 |
caatgccaggaatcacaggtccttcagattattctaaagaacctattcgtcacccctctcttcaaattaactccaagg |
558 |
Q |
| |
|
||||||||||| | |||| || ||||||||||| |||||||| |||||| || ||||||||||| |||||||||| |
|
|
| T |
8474258 |
caatgccaggattaacagcaccatcagattattccaaagaaccacctcgtcatccttctcttcaaatcaactccaagg |
8474181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University