View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17795_low_21 (Length: 409)
Name: NF17795_low_21
Description: NF17795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17795_low_21 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 24079513 - 24079900
Alignment:
| Q |
1 |
tctctcggcttagcattcaactcttgttgaataggttgcaagcgttgttcgttttcatcaacaaaccttgttagacaatcaaactttctcggcttagcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
24079513 |
tctctcggcttagcattcaactcttgttgaatagattgcaagcgttgttcgttttcatcaaccaaccttgttagagaatcaaactttctcggcttagcat |
24079612 |
T |
|
| Q |
101 |
tgaggtctccataccacaagttcgactcttcttgaacagatttcaagagttgaagagcgatgtagtctttcatgatctttagaattgaatgcggtggttc |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
24079613 |
agaggtctccataccacaagttcgac---tcttgaacagatttcaagagttgaagagcgttgtagtctttcatcatctttagaattgaatgtggtggttc |
24079709 |
T |
|
| Q |
201 |
catgtctctcaaaccaaaggtttcgttctttctttgtttctttgcgtgcgggtgttttttggcacagactttactgtgaagtatatgtatagtaagagtc |
300 |
Q |
| |
|
||| |||||||||||||||||||||||||||| ||||||||| |||| ||||| |||| ||||||||| ||||||| ||||| |||||| |||||| |
|
|
| T |
24079710 |
catatctctcaaaccaaaggtttcgttctttc----tttctttgcttgcgagtgttgtttgccacagacttgactgtgatatatatttatagtgagagtc |
24079805 |
T |
|
| Q |
301 |
gctaggagtctagggtttctccctaaacgcctataaattagaatcaaatgtcgcaaattccaaatttttgtatacaacgagcatgaaactatatt |
395 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||||||||| || |||||||||||| || |||| | | |||||||||||||||| |
|
|
| T |
24079806 |
tctaggagtctagggtttctgtctaaacacctataaattagaatcaaatctcacaaattccaaatcattttatagatccagcatgaaactatatt |
24079900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 24079436 - 24079529
Alignment:
| Q |
8 |
gcttagcattcaactcttgttgaataggttgcaagcgttgttcgttttcatcaacaaaccttgttagacaatcaaactttctcggcttagcatt |
101 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
24079436 |
gcttagcattcaactcttgttgaatagattgcaagagtttttcgttttcatcaaccaaccttgttagacaatcaaactctctcggcttagcatt |
24079529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 16437377 - 16437279
Alignment:
| Q |
9 |
cttagcattcaactcttgttgaataggttgcaagcgttgttcgttttcatcaacaaaccttgttagacaatcaaactttctcggcttagcattgaggtc |
107 |
Q |
| |
|
||||||||||||||| |||| || || ||||||| ||||||| ||||||||||| ||||||||||||||||||||| | || ||||||||| |||||| |
|
|
| T |
16437377 |
cttagcattcaactcatgttcaacagtttgcaagagttgttctttttcatcaaccgaccttgttagacaatcaaactctatcagcttagcatagaggtc |
16437279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 16437147 - 16437094
Alignment:
| Q |
182 |
gaattgaatgcggtggttccatgtctctcaaaccaaaggtttcgttctttcttt |
235 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||| |||||||||| |||||||||| |
|
|
| T |
16437147 |
gaattgaatgtggtggtttcatgtctctcaaagcaaaggtttctttctttcttt |
16437094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University