View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17795_low_23 (Length: 400)
Name: NF17795_low_23
Description: NF17795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17795_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 15 - 382
Target Start/End: Original strand, 27772800 - 27773164
Alignment:
| Q |
15 |
cataggcgcttaattaagatgtttatccaaacagagcctttatccttcaattcaattgtttcgaatttggactttgtatacataaaatttgatttgcata |
114 |
Q |
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| T |
27772800 |
cataggcgcttaattaagatgtttatccaaacagagcctttacccttcaattcaattgtttcaaatttggactttgtatacataaaatttgatgtgctta |
27772899 |
T |
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| Q |
115 |
atttctgagataacatagtaatattcaacagttaaattagtgaaacctaatatctgtggagnnnnnnnnnnnnnnngaagaatatctgtggagttattaa |
214 |
Q |
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| T |
27772900 |
atttctgagataacatagtaatattcaacagttaaattagtgaaacctaatatctgtggagttattttttttt---gaagaatttctgtggagttattaa |
27772996 |
T |
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| Q |
215 |
atggattaattatatcaagagttagggatgcggtaagtgaatcttcaaccatgtataacgtatgtatgcagtacatttattgttgaaatatataaaatca |
314 |
Q |
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| T |
27772997 |
atggattaattatatcaagagttagggatgcggtaagtggatcttcaaccatgtataacgtatgtatgcagtacatttattgttgaaatatataaaatca |
27773096 |
T |
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| Q |
315 |
tagcctaagaatatcccgcgtgagtattttggcgtggttttgtgaccggatctaatgctccaaggagc |
382 |
Q |
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| T |
27773097 |
tagcctaagaatatcctgcgtgagtattttggcgtggttttgtgaccggatctaatgctccaaggagc |
27773164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 49365950 - 49365990
Alignment:
| Q |
20 |
gcgcttaattaagatgtttatccaaacagagcctttatcct |
60 |
Q |
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| T |
49365950 |
gcgcttaactaagttgtttatccaaacagagccttgatcct |
49365990 |
T |
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