View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17795_low_24 (Length: 400)

Name: NF17795_low_24
Description: NF17795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17795_low_24
NF17795_low_24
[»] chr7 (14 HSPs)
chr7 (13-382)||(7327714-7328083)
chr7 (13-306)||(7311481-7311774)
chr7 (13-90)||(7306602-7306679)
chr7 (57-202)||(20456085-20456230)
chr7 (322-382)||(7311375-7311435)
chr7 (64-113)||(21210846-21210895)
chr7 (57-109)||(20414456-20414508)
chr7 (70-120)||(22525580-22525630)
chr7 (74-120)||(22534240-22534286)
chr7 (159-208)||(20414570-20414619)
chr7 (155-202)||(21210756-21210803)
chr7 (174-207)||(22525511-22525544)
chr7 (172-204)||(21221220-21221252)
chr7 (167-199)||(22534315-22534347)
[»] scaffold0064 (1 HSPs)
scaffold0064 (65-113)||(23807-23855)
[»] chr4 (2 HSPs)
chr4 (74-121)||(2910627-2910674)
chr4 (70-114)||(11982095-11982139)
[»] chr6 (1 HSPs)
chr6 (165-193)||(6954876-6954904)


Alignment Details
Target: chr7 (Bit Score: 362; Significance: 0; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 13 - 382
Target Start/End: Original strand, 7327714 - 7328083
Alignment:
Q  13 aatatctgatagattaggttgtttcgatgatttcaattatgaatggaattcttggaggtttgtgttttgttatgataattcaaccaacacttataaggtt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7327714 aatatctgatagattaggttgtttcgatgatttcaattatgaatggaattcttggaggtttgtgttttgttatgataattcaaccaacacttataaggtt 7327813  T
Q  113 gtagccttgcattataatagcaattttagcaaccctaaggttgaggtgagcatttttactttgggtgataatgtttggagaactattcaaactttagctg 212  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7327814 gtagccttgcattataatagcaattttagcaatcctaaggttgaggtgagcatttttactttgggtgataatgtttggaaaactattcaaactttagctg 7327913  T
Q  213 ttttgcctcttcagatagactttgcttattggagagtttacgagggtgtacaatttaattgcactgttaactggttggcacgcaatcggattcctaccaa 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7327914 ttttgcctcttcagatagactttgcttattggagagtttacgagggtgtacaatttaattgcactgttaactggttggcacgcaatcggattcctaccaa 7328013  T
Q  313 tactgctagtattattaatgaatttgtgattgtttcactacatctagggaccgagacatacacaaagttg 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7328014 tactgctagtattattaatgaatttgtgattgtttcactacatctagggaccgagacatacacaaagttg 7328083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 13 - 306
Target Start/End: Complemental strand, 7311774 - 7311481
Alignment:
Q  13 aatatctgatagattaggttgtttcgatgatttcaattatgaatggaattcttggaggtttgtgttttgttatgataattcaaccaacacttataaggtt 112  Q
    |||||||||||| |||||| |||||||||||||| |||||| || ||||||||||||||| |||||||||||||||||||||||  ||  ||||||||||    
T  7311774 aatatctgataggttaggtagtttcgatgatttcgattatggatcgaattcttggaggttcgtgttttgttatgataattcaacggactattataaggtt 7311675  T
Q  113 gtagccttgcattataatagcaattttagcaaccctaaggttgaggtgagcatttttactttgggtgataatgtttggagaactattcaaactttagctg 212  Q
    || ||||||||||||||| | ||| | | || |||   |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||     
T  7311674 gtggccttgcattataatggaaatgtcaacagccccgtggttgaggtgagcattttcactttgggtgataatgtttggagaactatacaaactttatctt 7311575  T
Q  213 ttttgcctcttcagatagactttgcttattggagagtttacgagggtgtacaatttaattgcactgttaactggttggcacgcaatcggattcc 306  Q
    || ||||||||||| |   || |   ||||||||| | || || ||||||||||| || ||||| |||||||||||||||||||||||||||||    
T  7311574 ttgtgcctcttcagcttctctatagctattggagaatgtatgatggtgtacaattcaactgcacggttaactggttggcacgcaatcggattcc 7311481  T

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Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 7306679 - 7306602
Alignment:
Q  13 aatatctgatagattaggttgtttcgatgatttcaattatgaatggaattcttggaggtttgtgttttgttatgataa 90  Q
    |||||||||||||| ||| ||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||    
T  7306679 aatatctgatagatcaggctgtttcgatgatttcaattataaatcgaattcttggaggttcgtgttttgttatgataa 7306602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 57 - 202
Target Start/End: Original strand, 20456085 - 20456230
Alignment:
Q  57 ggaattcttggaggtttgtgttttgttatgataattcaaccaacacttataaggttgtagccttgcattataatagcaatttt-agcaaccctaaggttg 155  Q
    |||| ||||||| |||||||||||||| ||||||||||||| |||| ||||||||||| |||||| ||| | | ||   |||| |  || ||| |||||     
T  20456085 ggaactcttggatgtttgtgttttgttttgataattcaaccgacacatataaggttgtggccttgaattgtga-agatgttttcaaaaaacctgaggtta 20456183  T
Q  156 aggtgagcatttttactttgggtgataatgtttggagaactattcaa 202  Q
    |  |||||||||||| ||||||||||||||||||||||| |||||||    
T  20456184 aaatgagcatttttagtttgggtgataatgtttggagaagtattcaa 20456230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 322 - 382
Target Start/End: Complemental strand, 7311435 - 7311375
Alignment:
Q  322 tattattaatgaatttgtgattgtttcactacatctagggaccgagacatacacaaagttg 382  Q
    ||||||| |||||||||||||| ||||||||||| ||||||| ||||||||||||||||||    
T  7311435 tattatttatgaatttgtgattatttcactacatatagggactgagacatacacaaagttg 7311375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 113
Target Start/End: Complemental strand, 21210895 - 21210846
Alignment:
Q  64 ttggaggtttgtgttttgttatgataattcaaccaacacttataaggttg 113  Q
    ||||| ||||||||||||||||||||||| |||| |||||||||||||||    
T  21210895 ttggaagtttgtgttttgttatgataatttaaccgacacttataaggttg 21210846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 57 - 109
Target Start/End: Original strand, 20414456 - 20414508
Alignment:
Q  57 ggaattcttggaggtttgtgttttgttatgataattcaaccaacacttataag 109  Q
    |||| ||||||| |||||||||| |||||||| ||||||||||||||||||||    
T  20414456 ggaactcttggatgtttgtgtttggttatgatgattcaaccaacacttataag 20414508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 120
Target Start/End: Complemental strand, 22525630 - 22525580
Alignment:
Q  70 gtttgtgttttgttatgataattcaaccaacacttataaggttgtagcctt 120  Q
    |||||||||| ||||||||||||||||| |||| ||||| |||||||||||    
T  22525630 gtttgtgtttggttatgataattcaaccgacacctataaagttgtagcctt 22525580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 120
Target Start/End: Original strand, 22534240 - 22534286
Alignment:
Q  74 gtgttttgttatgataattcaaccaacacttataaggttgtagcctt 120  Q
    |||||| ||||||||||||||||| |||| |||||||||||||||||    
T  22534240 gtgtttggttatgataattcaaccgacacctataaggttgtagcctt 22534286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 20414570 - 20414619
Alignment:
Q  159 tgagcatttttactttgggtgataatgtttggagaactattcaaacttta 208  Q
    |||||||||||| ||||||||||||||||||||||| |||| ||| ||||    
T  20414570 tgagcatttttagtttgggtgataatgtttggagaagtattaaaagttta 20414619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 202
Target Start/End: Complemental strand, 21210803 - 21210756
Alignment:
Q  155 gaggtgagcatttttactttgggtgataatgtttggagaactattcaa 202  Q
    |||||||||||||||| ||| ||||||||| |||||| ||||||||||    
T  21210803 gaggtgagcatttttagtttaggtgataatatttggaaaactattcaa 21210756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 22525544 - 22525511
Alignment:
Q  174 tgggtgataatgtttggagaactattcaaacttt 207  Q
    |||||||||||||||||||||||||| |||||||    
T  22525544 tgggtgataatgtttggagaactattaaaacttt 22525511  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 204
Target Start/End: Complemental strand, 21221252 - 21221220
Alignment:
Q  172 tttgggtgataatgtttggagaactattcaaac 204  Q
    |||| ||||||||||||||||||||||||||||    
T  21221252 tttgagtgataatgtttggagaactattcaaac 21221220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 22534315 - 22534347
Alignment:
Q  167 tttactttgggtgataatgtttggagaactatt 199  Q
    ||||| |||||||||||||||||||||||||||    
T  22534315 tttaccttgggtgataatgtttggagaactatt 22534347  T

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Target: scaffold0064 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 23807 - 23855
Alignment:
Q  65 tggaggtttgtgttttgttatgataattcaaccaacacttataaggttg 113  Q
    |||| |||||||||| ||||||| |||| ||||||||||||||||||||    
T  23807 tggaagtttgtgtttggttatgagaatttaaccaacacttataaggttg 23855  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 121
Target Start/End: Original strand, 2910627 - 2910674
Alignment:
Q  74 gtgttttgttatgataattcaaccaacacttataaggttgtagccttg 121  Q
    |||||| ||||||||||||||||  |||||||||||||||| ||||||    
T  2910627 gtgtttggttatgataattcaactcacacttataaggttgtggccttg 2910674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 11982139 - 11982095
Alignment:
Q  70 gtttgtgttttgttatgataattcaaccaacacttataaggttgt 114  Q
    |||||||||| |||||| |||||||| | ||||||||||||||||    
T  11982139 gtttgtgtttggttatgttaattcaagcgacacttataaggttgt 11982095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 193
Target Start/End: Complemental strand, 6954904 - 6954876
Alignment:
Q  165 tttttactttgggtgataatgtttggaga 193  Q
    |||||||||||||||||||||||||||||    
T  6954904 tttttactttgggtgataatgtttggaga 6954876  T

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