View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17795_low_26 (Length: 380)
Name: NF17795_low_26
Description: NF17795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17795_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 351
Target Start/End: Complemental strand, 29554950 - 29554634
Alignment:
| Q |
18 |
gaagcaatataacctgaagcaccagttacacaaactacctttccttcactgctattcatgttctcaatttcttatgatcttatcaatagactgatagatg |
117 |
Q |
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| T |
29554950 |
gaagcaatataacctgaagcaccagttacacaaaccacctttccttcactgctattcattttctcaatttcttatgatcttatcaatagactgatagatg |
29554851 |
T |
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| Q |
118 |
gtttattattctaaacaagactttggtgaaatagcacctcaccaactaagttgctttttattattaaacaaataagtagcgggtaaatttcggtaccaat |
217 |
Q |
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| T |
29554850 |
gtttatt-----------------ggttaaatagcacctcaccaactaagttgctttttattattaaacaaataagtagcgggtaaatttcggtaccaat |
29554768 |
T |
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| Q |
218 |
cctctatctctaactttttaggcccatccgttgaccataaaacataaaattgaatgttgaatttgttgggaaatattgtgtataccaaaatagaaagaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
29554767 |
cctctatctctaactttttaggcccatccgttgaccttaaaacataaaattgaatgttgaatttgttgggaaatattgtgtataccaaaagagaaagaaa |
29554668 |
T |
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| Q |
318 |
nnnnnnnnatgtgatagtttgaaggagatagtgt |
351 |
Q |
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|||||||||||||||||||||||||| |
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| T |
29554667 |
aaaattttatgtgatagtttgaaggagatagtgt |
29554634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 29559166 - 29559119
Alignment:
| Q |
18 |
gaagcaatataacctgaagcaccagttacacaaactacctttccttca |
65 |
Q |
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|||||||||||||||||| |||| |||||||| || |||||||||||| |
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| T |
29559166 |
gaagcaatataacctgaaccacctgttacacacacaacctttccttca |
29559119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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