View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17795_low_27 (Length: 378)
Name: NF17795_low_27
Description: NF17795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17795_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 396591 - 396232
Alignment:
| Q |
1 |
aacaacgttccacattgaaattcaagtttaacaacttatcatgcaaatgctgaaa-gaaaaatacataaacatgaccaagacttgggttctgactttata |
99 |
Q |
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| T |
396591 |
aacaacgttccacattgaaattcaagtttaacaacttatcatgcaaatgctgaaaagaaaaatacataaacatgaccaagacttgggttctgactttata |
396492 |
T |
|
| Q |
100 |
attggacccaatttacggaaaactggaacatggactgtccaattttgatcgaacagtccagattgtgtgacagcgctaattgtgcaattcccttactgaa |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
396491 |
attggacccaatttacggaaaactggaacatggactgtccaattttgatcgaacagtccagattgtgtgacagcactaattgtgtaattcccttactgaa |
396392 |
T |
|
| Q |
200 |
gtgaatccggacctcatatcttaaccaagaaaatgcatgcgcgatgttcgtgctttcactcaggcagtttnnnnnnncacaatgaaatttaaaagtttcc |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
396391 |
gtgaatccggacctcatatcttaaccaagaaaatgcatgcgcgatgttcgcgctttcactcaggcagtttaaaaaaacacaatgaaatttaaaagtttcc |
396292 |
T |
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| Q |
300 |
aaccatcatcaatacggaaagttctaggggtggaccaccttgatagatggtccacaacct |
359 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
396291 |
aaccatcatcaatacggcaagttctaggggtggaccaccttgatagatggtccacaacct |
396232 |
T |
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