View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17795_low_33 (Length: 325)
Name: NF17795_low_33
Description: NF17795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17795_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 12 - 310
Target Start/End: Complemental strand, 3249479 - 3249181
Alignment:
| Q |
12 |
aagaatttactactaatgcaaggaaggagacaacactaatgaaaataattcacgacttaatgtgcatgtgattgtaggaaattgaatggatcaaacaaca |
111 |
Q |
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| T |
3249479 |
aagaatttactactaatgcaaggaaggagacaacactaatgaaaataattcacgacttaatgtgcatgtgattgtaggaaattgaatggatcaaacaaca |
3249380 |
T |
|
| Q |
112 |
ctgaaggacctgtcaaattgaaaaccagaaatgatttgaatggcaagaaacaggttgaagctgacatgttgggcaaggtctctggtgctagaaaagactc |
211 |
Q |
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| T |
3249379 |
ctgaaggacctgtcaaattgaaaaccaaaaatgatttgaatggcaagaaacaggttgatgctgacatgttgggcaaggtctctggtgctagaaaagactc |
3249280 |
T |
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| Q |
212 |
acactctctgcctagaaagaatctaaagggcactgatttgatgcataaagaaactgctgagcctgtgaactcccctgttaagattttcgaccttgaaac |
310 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3249279 |
acactctctgcatagaaagaatctaaagggcactgatttgatgcataaagaaactgctgagcctgtgaactcccctgttaagattttcgaccttgaaac |
3249181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 82 - 310
Target Start/End: Original strand, 36905221 - 36905449
Alignment:
| Q |
82 |
attgtaggaaattgaatggatcaaacaacactgaaggacctgtcaaattgaaaaccagaaatgatttgaatggcaagaaacaggttgaagctgacatgtt |
181 |
Q |
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||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
36905221 |
attgtaggaaactgaatggatcaaacaacactgaaggatctgtcaaattgaaaaccagaaatgatttgaatggcaagaaacaggttgatgctgtcatgtt |
36905320 |
T |
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| Q |
182 |
gggcaaggtctctggtgctagaaaagactcacactctctgcctagaaagaatctaaagggcactgatttgatgcataaagaaactgctgagcctgtgaac |
281 |
Q |
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| T |
36905321 |
gggcaaggtatctggtgcttgaaaagactcacactctctgcctaccaagaatctagatggctctgatttgatgcataaagatattgctgagtttgtgaac |
36905420 |
T |
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| Q |
282 |
tcccctgttaagattttcgaccttgaaac |
310 |
Q |
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| T |
36905421 |
tcccctgttaagattttcgaccttgaaac |
36905449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 3243455 - 3243408
Alignment:
| Q |
17 |
tttactactaatgcaaggaaggagacaacactaatgaaaataattcac |
64 |
Q |
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| T |
3243455 |
tttactactaatgcaaggaaggagacaacaccaatgagaataattcac |
3243408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 82 - 310
Target Start/End: Complemental strand, 28102782 - 28102554
Alignment:
| Q |
82 |
attgtaggaaattgaatggatcaaacaacactgaaggacctgtcaaattgaaaaccagaaatgatttgaatggcaagaaacaggttgaagctgacatgtt |
181 |
Q |
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||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||| |
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| T |
28102782 |
attgtaggaaactgaatggatcaaacaacactgacggacctgtcaaattgaaaaccagaaatgatttgagtggcaagaaacaggttgatgctgacacgtt |
28102683 |
T |
|
| Q |
182 |
gggcaaggtctctggtgctagaaaagactcacactctctgcctagaaagaatctaaagggcactgatttgatgcataaagaaactgctgagcctgtgaac |
281 |
Q |
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||||||| ||||||||||| ||||||||||||||||||| ||||| ||||||||| | ||| |||||||||||||||||||||||| ||||| ||||||| |
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| T |
28102682 |
gggcaagctctctggtgctcgaaaagactcacactctcttcctagcaagaatctagatggctctgatttgatgcataaagaaactgatgagcatgtgaac |
28102583 |
T |
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| Q |
282 |
tcccctgttaagattttcgaccttgaaac |
310 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
28102582 |
tcccctgttaagattttcgaccttgaaac |
28102554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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