View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17795_low_34 (Length: 325)
Name: NF17795_low_34
Description: NF17795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17795_low_34 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 170 - 325
Target Start/End: Complemental strand, 28885296 - 28885140
Alignment:
| Q |
170 |
ctatcaactaactatcatttccactnnnnnnntactattatttttatactagatcaacatagatatcgataataaagaaaaacatttgat-ttttcagta |
268 |
Q |
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| T |
28885296 |
ctatcaactaactatcatttccactaaaaaaatactattatttttatattagatcaacatagatatcaataataaagaaaaacatttgatttttttagta |
28885197 |
T |
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| Q |
269 |
ttaattaaatatctataataaaacaacatttggtttttcagtaccaatactattatt |
325 |
Q |
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| T |
28885196 |
ttaattaaatatctataataaaaaaacattttgtttttcagtacaaatactattatt |
28885140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 170 - 307
Target Start/End: Complemental strand, 43039151 - 43039014
Alignment:
| Q |
170 |
ctatcaactaactatcatttccactnnnnnnn-tactattatttttatactagatcaacatagatatcgataataaagaaaaacatttgatttttcagta |
268 |
Q |
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| T |
43039151 |
ctatcaactaactatcatttccactaaaaaaaatactattatttttatattagatcaacatagatatcgataataaa-aaaaacatttgatttttcagta |
43039053 |
T |
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| Q |
269 |
ttaattaaatatctataataaaacaacatttggtttttc |
307 |
Q |
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| T |
43039052 |
ttaattaaatatctataataaaaaaacatttggtttttc |
43039014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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