View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17795_low_35 (Length: 314)
Name: NF17795_low_35
Description: NF17795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17795_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 299
Target Start/End: Original strand, 13973562 - 13973849
Alignment:
| Q |
19 |
atgtgtgcgtggtctctgaaaaccaaaccaaacccatactcaatcagcgatgttaccatatgaaaaagtttgtcctcattcaaggacaacgaatcatcat |
118 |
Q |
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| T |
13973562 |
atgtgtgcgtggtctctgaaaaccaaaccaaacccatactcaatcagcgatgttaccatatgaaaaagtttgtcctcattcaaggacaacgaatcatcat |
13973661 |
T |
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| Q |
119 |
catcatagcatcatttcccatcttcccttcaatgtaatcatgcatactttgagt-------cataaaacttcaggttccttattaaggccaattagaagg |
211 |
Q |
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| T |
13973662 |
catcatatcatcatttcccatcttcccttcaatgtaatcatgcatactttgagtctttgaccataaaacttcaggttccttattaaggccaattagaagg |
13973761 |
T |
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| Q |
212 |
ggaatcttaacacgagaaatacatggagctccttattttattgtgtttacagatcttctcaaatactacatggaataaggttttaaat |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
13973762 |
ggaatcttaacacgagaaatacatggagctccttattttattgtgtttacagatcttctcaaacactacatggaataaggttttaaat |
13973849 |
T |
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