View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17795_low_37 (Length: 307)
Name: NF17795_low_37
Description: NF17795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17795_low_37 |
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| [»] scaffold1152 (1 HSPs) |
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Alignment Details
Target: scaffold1152 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: scaffold1152
Description:
Target: scaffold1152; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 92 - 301
Target Start/End: Complemental strand, 1364 - 1155
Alignment:
| Q |
92 |
tatgaagggttgcatttaatttggacccatgaaaatatggtttcatgctggaccaatttgatatgagccatggatatataattttataatttgtatggac |
191 |
Q |
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| T |
1364 |
tatgaagggttgcatttaatttggacccatgaaaatatggtttcatgctggaccaatttgatatgagccatggatatataattttataatttttatggac |
1265 |
T |
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| Q |
192 |
agattagatacttgggaaccttctcttcaggtggatggtacgaatgtgtggtatttgcagaaataccaagatagtttatactatttggtttatgttttaa |
291 |
Q |
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| T |
1264 |
aaattagatacttggcaaccttctcttcaggtggatggtacgaatgtgtaatatttgcagaaataccaagatagtttatactatttggtttttgttttaa |
1165 |
T |
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| Q |
292 |
atattcttgg |
301 |
Q |
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| T |
1164 |
atattattgg |
1155 |
T |
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Target: chr8 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 99 - 293
Target Start/End: Complemental strand, 43119880 - 43119686
Alignment:
| Q |
99 |
ggttgcatttaatttggacccatgaaaatatggtttcatgctggaccaatttgatatgagccatggatatataattttataatttgtatggacagattag |
198 |
Q |
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| T |
43119880 |
ggttgcgtttaatttggacccatgaaaatatggtttcatgttggaccaatttgatatgagccatggatatataattttataatttgtattgacagattag |
43119781 |
T |
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| Q |
199 |
atacttgggaaccttctcttcaggtggatggtacgaatgtgtggtatttgcagaaataccaagatagtttatactatttggtttatgttttaaat |
293 |
Q |
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| T |
43119780 |
atacttggcaaccttctcttcgggtggatggtacaaatttgtggtatttgcagaaataccaatatagtttatactatttggtttttgttttaaat |
43119686 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 185
Target Start/End: Complemental strand, 28394088 - 28394014
Alignment:
| Q |
111 |
tttggacccatgaaaatatggtttcatgctggaccaatttgatatgagccatggatatataattttataatttgt |
185 |
Q |
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| T |
28394088 |
tttggactcatgaatttatgggttcatactgaaccaatttaatatcagccatggatatatagtttactaatttgt |
28394014 |
T |
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