View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17795_low_40 (Length: 297)

Name: NF17795_low_40
Description: NF17795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17795_low_40
NF17795_low_40
[»] chr2 (5 HSPs)
chr2 (21-101)||(35925904-35925985)
chr2 (213-280)||(6801054-6801122)
chr2 (213-280)||(35926125-35926193)
chr2 (213-280)||(39990583-39990651)
chr2 (213-287)||(35920134-35920209)
[»] chr6 (4 HSPs)
chr6 (213-286)||(10754597-10754671)
chr6 (212-286)||(10750279-10750354)
chr6 (212-286)||(10748683-10748758)
chr6 (213-273)||(18613098-18613159)
[»] chr3 (3 HSPs)
chr3 (213-285)||(31125751-31125824)
chr3 (213-280)||(38930471-38930539)
chr3 (213-280)||(53107642-53107710)
[»] chr7 (3 HSPs)
chr7 (213-280)||(23780472-23780540)
chr7 (213-280)||(43920610-43920678)
chr7 (213-280)||(40706109-40706177)
[»] chr4 (1 HSPs)
chr4 (213-280)||(38393563-38393631)
[»] chr1 (8 HSPs)
chr1 (213-280)||(39972786-39972854)
chr1 (213-286)||(22908321-22908395)
chr1 (213-285)||(48049405-48049478)
chr1 (213-280)||(29812825-29812893)
chr1 (213-280)||(48040176-48040244)
chr1 (213-280)||(48053130-48053198)
chr1 (213-280)||(48042228-48042296)
chr1 (213-280)||(48054682-48054750)


Alignment Details
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 35925904 - 35925985
Alignment:
Q  21 gtggattgtgaaacttgtaacattaagatattgtcaatg-aaaatcttgtggcttttcttacaatatttatagttctgtaat 101  Q
    |||||||| ||||||| ||||||| |||||||||||||| ||||||||||||| ||||| ||||||| ||||||||||||||    
T  35925904 gtggattgagaaacttataacattgagatattgtcaatgaaaaatcttgtggcctttctcacaatatatatagttctgtaat 35925985  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 213 - 280
Target Start/End: Original strand, 6801054 - 6801122
Alignment:
Q  213 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatg 280  Q
    |||||||||||||||||||||||||||| || ||||||||| | |||||||||| |||||||| |||||    
T  6801054 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatg 6801122  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 213 - 280
Target Start/End: Original strand, 35926125 - 35926193
Alignment:
Q  213 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatg 280  Q
    |||||||||||||||||||||||||||| || ||||||||| | |||||||||| |||||||| |||||    
T  35926125 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatg 35926193  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 213 - 280
Target Start/End: Complemental strand, 39990651 - 39990583
Alignment:
Q  213 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatg 280  Q
    |||||||||||||||||||||||||||| || ||||||||| | |||||||||| |||||||| |||||    
T  39990651 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatg 39990583  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 213 - 287
Target Start/End: Original strand, 35920134 - 35920209
Alignment:
Q  213 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatgtcctttg 287  Q
    |||||||||||||||||||||| ||||| || ||||||||| |  ||||||||| |||||||| | ||| ||||||    
T  35920134 ggggcattccgagaattgaacttgggacctctcgcaccctaagcaagaatcataccactagaccagatgccctttg 35920209  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 286
Target Start/End: Original strand, 10754597 - 10754671
Alignment:
Q  213 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatgtccttt 286  Q
    |||||||||||||||||||||||||||| || ||||||||| | |||||||||| |||||||| ||||| |||||    
T  10754597 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgcccttt 10754671  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 286
Target Start/End: Original strand, 10750279 - 10750354
Alignment:
Q  212 gggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatgtccttt 286  Q
    ||||||||||||||||||||||||||||| ||  |||||||| | |||||||||| |||||||  ||||| |||||    
T  10750279 gggggcattccgagaattgaactcgggacctcttgcaccctaagcgagaatcataccactagatcaaatgcccttt 10750354  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 286
Target Start/End: Original strand, 10748683 - 10748758
Alignment:
Q  212 gggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatgtccttt 286  Q
    |||||||||||||||||||| |||| ||| || | |||||||   ||||||||||||||||||| ||||| |||||    
T  10748683 gggggcattccgagaattgagctcgagacctctcacaccctaaacgagaatcatatcactagaccaaatgcccttt 10748758  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 273
Target Start/End: Complemental strand, 18613159 - 18613098
Alignment:
Q  213 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactaga 273  Q
    ||||||||||||||||| |||||||||| || ||||||||| |  ||||||||| |||||||    
T  18613159 ggggcattccgagaattaaactcgggacctctcgcaccctaagcaagaatcataccactaga 18613098  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 213 - 285
Target Start/End: Complemental strand, 31125824 - 31125751
Alignment:
Q  213 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatgtcctt 285  Q
    |||||||||||||||||||||||||||| || ||||||||| | |||||||||| |||||||| ||||| ||||    
T  31125824 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccctt 31125751  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 213 - 280
Target Start/End: Original strand, 38930471 - 38930539
Alignment:
Q  213 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatg 280  Q
    |||||||||||||||||||||||||||| || ||||||||| | |||||||||| |||||||| |||||    
T  38930471 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatg 38930539  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 213 - 280
Target Start/End: Complemental strand, 53107710 - 53107642
Alignment:
Q  213 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatg 280  Q
    |||||||||||||||||||||||||||| || ||||||||| | |||||||||| |||||||| |||||    
T  53107710 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatg 53107642  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 213 - 280
Target Start/End: Complemental strand, 23780540 - 23780472
Alignment:
Q  213 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatg 280  Q
    |||||||||||||||||||||||||||| || ||||||||| | |||||||||| |||||||| |||||    
T  23780540 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatg 23780472  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 213 - 280
Target Start/End: Complemental strand, 43920678 - 43920610
Alignment:
Q  213 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatg 280  Q
    |||||||||||||||||||||||||||| || ||||||||| | |||||||||| |||||||| |||||    
T  43920678 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatg 43920610  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 280
Target Start/End: Complemental strand, 40706177 - 40706109
Alignment:
Q  213 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatg 280  Q
    |||||||||||||||||||||||||||| || |||||| || | ||||||||||  ||||||| |||||    
T  40706177 ggggcattccgagaattgaactcgggacctctcgcaccttaagcgagaatcatacaactagaccaaatg 40706109  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 213 - 280
Target Start/End: Original strand, 38393563 - 38393631
Alignment:
Q  213 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatg 280  Q
    |||||||||||||||||||||||||||| || ||||||||| | |||||||||| |||||||| |||||    
T  38393563 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatg 38393631  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 213 - 280
Target Start/End: Original strand, 39972786 - 39972854
Alignment:
Q  213 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatg 280  Q
    |||||||||||||||||||||||||||| || ||||||||| | |||||||||| |||||||| |||||    
T  39972786 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatg 39972854  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 213 - 286
Target Start/End: Complemental strand, 22908395 - 22908321
Alignment:
Q  213 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatgtccttt 286  Q
    |||||||||||||||||||||||| ||| || ||||||||| | |||||||||| |||||||| ||||| |||||    
T  22908395 ggggcattccgagaattgaactcgagacctctcgcaccctaagcgagaatcataccactagaccaaatgcccttt 22908321  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 285
Target Start/End: Complemental strand, 48049478 - 48049405
Alignment:
Q  213 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatgtcctt 285  Q
    |||||||||||||||| ||||||||||| || ||||||| | | |||||||||| |||||||| ||||| ||||    
T  48049478 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctt 48049405  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 280
Target Start/End: Original strand, 29812825 - 29812893
Alignment:
Q  213 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatg 280  Q
    |||||||||||||||| ||||||||||| || ||||||| | | |||||||||| |||||||| |||||    
T  29812825 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatg 29812893  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 280
Target Start/End: Complemental strand, 48040244 - 48040176
Alignment:
Q  213 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatg 280  Q
    |||||||||||||||| ||||||||||| || ||||||| | | |||||||||| |||||||| |||||    
T  48040244 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatg 48040176  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 280
Target Start/End: Complemental strand, 48053198 - 48053130
Alignment:
Q  213 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatg 280  Q
    |||||||||||||||||||||||||||| || ||||||| | | |||||| ||| |||||||| |||||    
T  48053198 ggggcattccgagaattgaactcgggacctctcgcacccaaagcgagaattataccactagaccaaatg 48053130  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 280
Target Start/End: Complemental strand, 48042296 - 48042228
Alignment:
Q  213 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatg 280  Q
    |||||||||||||||| |||||||| || || ||||||| | | |||||||||| |||||||| |||||    
T  48042296 ggggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatg 48042228  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 280
Target Start/End: Complemental strand, 48054750 - 48054682
Alignment:
Q  213 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatg 280  Q
    ||||||||||||||||||||||||| || || ||||||| | | |||||||||| | |||||| |||||    
T  48054750 ggggcattccgagaattgaactcggaacctctcgcacccaaagcgagaatcatacctctagaccaaatg 48054682  T

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